Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC002543.1-201ENST00000299783 1954 ntBASIC2.09□□□□□ -2.08
LHX3Q9UBR4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-37P-201ENST00000362692 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-655P-201ENST00000362858 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-11P-201ENST00000364234 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-25P-201ENST00000383873 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-1-201ENST00000383898 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-1032P-201ENST00000384100 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-48P-201ENST00000384161 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-36P-201ENST00000384172 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-4P-201ENST00000384205 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-5P-201ENST00000384238 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-3P-201ENST00000384314 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-16P-201ENST00000384385 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-15P-201ENST00000384534 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-2-201ENST00000384627 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-29P-201ENST00000384637 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-9-201ENST00000384776 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-33P-201ENST00000384793 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 SNORA16.2-201ENST00000390991 127 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-903P-201ENST00000391270 109 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AIMP1P2-201ENST00000425294 312 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 USP9YP8-201ENST00000441913 500 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AC011753.1-201ENST00000451001 220 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 MTCO2P18-201ENST00000457151 658 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.08□□□□□ -2.08
LHX3Q9UBR4 SNORA48.11-201ENST00000517015 89 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-586P-201ENST00000517265 104 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.08□□□□□ -2.08
LHX3Q9UBR4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AC118273.2-201ENST00000532092 465 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 CYCSP26-201ENST00000534107 320 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AC093249.1-201ENST00000567049 203 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 MIR5583-1-201ENST00000580941 59 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 RNU6-6P-201ENST00000606623 107 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AC103591.3-201ENST00000608684 209 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 Y_RNA.783-201ENST00000613546 102 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 AL354950.2-201ENST00000617939 290 ntBASIC2.08□□□□□ -2.08
LHX3Q9UBR4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.08□□□□□ -2.08
LHX3Q9UBR4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LHX3Q9UBR4 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LHX3Q9UBR4 RNU6-212P-201ENST00000362642 104 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 RNU6-552P-201ENST00000362869 119 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 RNU6-1210P-201ENST00000363775 107 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 RNU6-996P-201ENST00000365438 107 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 Y_RNA.409-201ENST00000383990 98 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 RNU6-1158P-201ENST00000391167 107 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AC016907.1-201ENST00000419483 435 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AL445646.1-201ENST00000431784 216 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.07□□□□□ -2.08
LHX3Q9UBR4 snoU13.14-201ENST00000459372 104 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 RPL30P12-201ENST00000474666 353 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.07□□□□□ -2.08
LHX3Q9UBR4 RNU6-377P-201ENST00000515965 102 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AL137161.1-201ENST00000532231 390 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AC023050.3-201ENST00000541142 333 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AC009127.3-201ENST00000570531 403 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AC080013.6-201ENST00000606185 215 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 AP001596.2-201ENST00000608410 312 ntBASIC2.07□□□□□ -2.08
LHX3Q9UBR4 MTND5P26-201ENST00000426018 1752 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 RNU6-259P-201ENST00000383999 107 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 CBX3P9-201ENST00000402326 552 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AL606489.2-201ENST00000433886 234 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC007969.2-201ENST00000441891 191 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AL121594.1-201ENST00000475906 575 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC109479.2-201ENST00000517842 174 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 IMMP1LP2-201ENST00000552954 492 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 HIF1AP1-201ENST00000553642 175 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AGGF1P4-201ENST00000568249 801 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 MIR3126-201ENST00000577443 74 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 MIR3941-201ENST00000582572 103 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC012507.3-201ENST00000603556 477 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AL670379.2-201ENST00000604983 252 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AL161423.1-201ENST00000613700 262 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AL158209.2-201ENST00000619266 216 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 AC090517.3-201ENST00000625170 141 ntBASIC2.06□□□□□ -2.08
LHX3Q9UBR4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.06□□□□□ -2.08
LHX3Q9UBR4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LHX3Q9UBR4 Y_RNA.40-201ENST00000362645 93 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 RNA5SP160-201ENST00000364866 120 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 Y_RNA.559-201ENST00000384686 107 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 SNORA80E-201ENST00000384744 137 ntBASIC2.05□□□□□ -2.08
LHX3Q9UBR4 AL591034.2-201ENST00000402839 359 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms