Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.36□□□□□ -1.87
DDX56Q9NY93 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.36□□□□□ -1.87
DDX56Q9NY93 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.36□□□□□ -1.87
DDX56Q9NY93 AC009233.1-201ENST00000616477 371 ntBASIC3.36□□□□□ -1.87
DDX56Q9NY93 SNORD98-201ENST00000636377 67 ntBASIC3.36□□□□□ -1.87
DDX56Q9NY93 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
DDX56Q9NY93 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
DDX56Q9NY93 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
DDX56Q9NY93 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
DDX56Q9NY93 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.35□□□□□ -1.87
DDX56Q9NY93 DYNLT3P1-201ENST00000378574 347 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 MT-TD-201ENST00000387419 68 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 PTMAP2-201ENST00000397627 327 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 RN7SKP158-201ENST00000410453 326 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 RNA5SP492-201ENST00000411330 114 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 AL590135.1-201ENST00000422215 156 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC019205.3-201ENST00000424573 156 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC016700.2-201ENST00000446011 156 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 Y_RNA.635-201ENST00000459041 101 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 FTH1P2-201ENST00000466086 412 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC015911.1-201ENST00000495111 156 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 HMGB1P35-201ENST00000503360 598 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 PTP4A1P4-201ENST00000512479 322 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 RNU5F-2P-201ENST00000516066 82 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 RPPH1-2P-201ENST00000516688 293 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC007458.1-201ENST00000542812 373 ntBASIC3.35□□□□□ -1.87
DDX56Q9NY93 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.35□□□□□ -1.87
DDX56Q9NY93 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
DDX56Q9NY93 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 RNU6-797P-201ENST00000363101 109 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 RNU4-73P-201ENST00000363164 141 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 Y_RNA.123-201ENST00000363338 102 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 Y_RNA.474-201ENST00000384341 102 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 Y_RNA.482-201ENST00000384377 111 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 MIR200C-201ENST00000384980 68 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 SNORA26.3-201ENST00000391119 136 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
DDX56Q9NY93 Z82205.1-201ENST00000428456 297 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 RPS3P1-201ENST00000456781 192 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 RNU6-277P-201ENST00000516272 106 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 RNU6-1016P-201ENST00000516689 94 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC245166.1-201ENST00000521012 253 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 HSPE1P20-201ENST00000538133 289 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC023824.2-201ENST00000566185 400 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC093249.1-201ENST00000567049 203 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC060766.3-201ENST00000591442 263 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 AC090517.3-201ENST00000625170 141 ntBASIC3.34□□□□□ -1.87
DDX56Q9NY93 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.34□□□□□ -1.87
DDX56Q9NY93 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
DDX56Q9NY93 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
DDX56Q9NY93 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
DDX56Q9NY93 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 U3.6-201ENST00000363622 211 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 RNU1-33P-201ENST00000364249 162 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 RNU6-596P-201ENST00000365395 98 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
DDX56Q9NY93 RNU6-784P-201ENST00000384330 106 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 RNU6-306P-201ENST00000384617 107 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 AL591034.2-201ENST00000402839 359 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AC245054.2-201ENST00000415639 319 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 MTND3P23-201ENST00000431980 347 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AL161788.1-201ENST00000441805 169 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 RNU6-586P-201ENST00000517265 104 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 AC093027.1-201ENST00000546698 429 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 IMMP1LP2-201ENST00000552954 492 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 MIR2682-201ENST00000580305 110 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 MIR4273-201ENST00000582824 84 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AL034555.1-201ENST00000604816 211 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AL138963.2-201ENST00000605137 226 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 uc_338.25-201ENST00000613756 156 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 AL359697.1-201ENST00000624879 587 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 MIR1302-1-201ENST00000637932 143 ntBASIC3.33□□□□□ -1.88
DDX56Q9NY93 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
DDX56Q9NY93 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX56Q9NY93 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
DDX56Q9NY93 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
DDX56Q9NY93 MIR148B-201ENST00000362252 99 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 RNU6-601P-201ENST00000384540 107 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms