Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC010587.2-201ENST00000511727 448 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 RNVU1-2-201ENST00000516326 135 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 Y_RNA.689-201ENST00000516589 107 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 VN1R107P-201ENST00000601784 209 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC112220.3-201ENST00000605502 502 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC091304.6-201ENST00000619761 202 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC024940.5-201ENST00000622889 474 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 AC013437.2-201ENST00000639587 677 ntBASIC1.33□□□□□ -2.2
USP42Q9H9J4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
USP42Q9H9J4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
USP42Q9H9J4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.32□□□□□ -2.2
USP42Q9H9J4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
USP42Q9H9J4 RNU6-23P-201ENST00000363283 107 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 RNU6-1210P-201ENST00000363775 107 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 SNORA62.1-201ENST00000364287 154 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 SNORD14B-201ENST00000364533 90 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 RNU6-769P-201ENST00000384407 104 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 RNU2-62P-201ENST00000410868 191 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.32□□□□□ -2.2
USP42Q9H9J4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.32□□□□□ -2.2
USP42Q9H9J4 AL590365.1-201ENST00000450788 243 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 AC093259.1-201ENST00000509755 300 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 TPT1P8-201ENST00000510120 555 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.32□□□□□ -2.2
USP42Q9H9J4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.32□□□□□ -2.2
USP42Q9H9J4 AL160236.1-201ENST00000556317 195 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 AC002400.1-201ENST00000569310 726 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.32□□□□□ -2.2
USP42Q9H9J4 AL355816.2-201ENST00000610049 647 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 MIR8074-201ENST00000615081 81 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 AC130454.1-201ENST00000622948 401 ntBASIC1.32□□□□□ -2.2
USP42Q9H9J4 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.32□□□□□ -2.2
USP42Q9H9J4 FARSBP1-201ENST00000435808 1778 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 SNORA4.1-201ENST00000364263 144 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 RNU6-190P-201ENST00000384154 102 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC1.31□□□□□ -2.2
USP42Q9H9J4 CR769776.1-201ENST00000441254 787 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 RPL30P6-201ENST00000475925 342 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.31□□□□□ -2.2
USP42Q9H9J4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.31□□□□□ -2.2
USP42Q9H9J4 AC078795.2-201ENST00000602835 1252 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 AP000860.1-201ENST00000605250 559 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 SNORD114-21-201ENST00000606412 72 ntBASIC1.31□□□□□ -2.2
USP42Q9H9J4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.3□□□□□ -2.2
USP42Q9H9J4 AC099786.3-201ENST00000565735 1410 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
USP42Q9H9J4 MIR26B-201ENST00000362251 77 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.3□□□□□ -2.2
USP42Q9H9J4 MIR150-201ENST00000385048 84 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 CBX3P9-201ENST00000402326 552 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 Y_RNA.597-201ENST00000410463 100 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 Y_RNA.623-201ENST00000411128 95 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC1.3□□□□□ -2.2
USP42Q9H9J4 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.3□□□□□ -2.2
USP42Q9H9J4 SDAD1P3-201ENST00000427380 333 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 AL354941.1-201ENST00000438600 464 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 RPL23AP35-201ENST00000451906 501 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 snoU13.9-201ENST00000458927 103 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.3□□□□□ -2.2
USP42Q9H9J4 AC023050.2-201ENST00000544968 387 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 AC136618.2-201ENST00000575091 400 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 MIR3973-201ENST00000579824 107 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 AC011712.1-201ENST00000588959 234 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 AC123912.5-201ENST00000605470 343 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 PRR13P7-201ENST00000605538 430 ntBASIC1.3□□□□□ -2.2
USP42Q9H9J4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.3□□□□□ -2.2
USP42Q9H9J4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.3□□□□□ -2.2
USP42Q9H9J4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
USP42Q9H9J4 CBX3P1-201ENST00000325243 554 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 RNU4-38P-201ENST00000364472 129 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 Y_RNA.393-201ENST00000383936 102 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 MIR10A-201ENST00000385043 110 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 MIR29B2-201ENST00000385055 81 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 RNU6-955P-201ENST00000410497 104 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 RNA5SP100-201ENST00000410903 110 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 RNA5SP59-201ENST00000410922 110 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 OR6C66P-201ENST00000414917 930 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.29□□□□□ -2.2
USP42Q9H9J4 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 AL353752.1-201ENST00000454946 260 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 DUXAP8-207ENST00000456786 622 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 AC134050.1-201ENST00000495088 933 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 AC114801.2-201ENST00000503825 781 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.29□□□□□ -2.2
USP42Q9H9J4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.29□□□□□ -2.2
USP42Q9H9J4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.29□□□□□ -2.2
USP42Q9H9J4 CR383656.8-201ENST00000549046 145 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 MIR3146-201ENST00000580367 79 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 AL158032.1-201ENST00000605401 106 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.29□□□□□ -2.2
USP42Q9H9J4 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms