Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 ZNF355P-201ENST00000427301 3216 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 Y_RNA.72-201ENST00000362894 103 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 RNA5SP99-201ENST00000364020 114 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 RNU6-384P-201ENST00000364900 104 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 SNORA67.3-201ENST00000384366 140 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 RNA5SP219-201ENST00000390940 113 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 SKA2P1-201ENST00000425592 390 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 SNRPEP9-201ENST00000436794 238 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AC098614.3-201ENST00000438957 440 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 HMGN2P23-201ENST00000456759 269 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AC092798.1-201ENST00000458542 409 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AC117503.1-201ENST00000472241 394 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 RPL23AP70-201ENST00000483361 460 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 RNA5SP200-201ENST00000516360 103 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 RNU6-1282P-201ENST00000516735 96 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 MIR548AC-201ENST00000585049 88 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AC092747.3-201ENST00000603769 301 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 LARP7P1-201ENST00000605576 316 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 Z82243.1-201ENST00000609432 473 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 FTX_3.1-201ENST00000610451 147 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 FAM157A-202ENST00000615155 405 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 AC104260.1-201ENST00000616660 539 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 U6.42-201ENST00000618440 107 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 FO624990.1-201ENST00000636373 85 ntBASIC2.49□□□□□ -2.01
UPF3AQ9H1J1 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RNU6-845P-201ENST00000362578 103 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 Y_RNA.33-201ENST00000362591 102 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RNU6-82P-201ENST00000363970 107 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 Y_RNA.373-201ENST00000365600 103 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL023284.1-201ENST00000403956 276 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RNU6-1025P-201ENST00000410629 104 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RNU6-607P-201ENST00000411283 108 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL353621.1-201ENST00000418219 243 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 MTCO3P46-201ENST00000425787 232 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 SNRPEP8-201ENST00000442866 260 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RNU7-167P-201ENST00000459160 62 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RPL7P43-201ENST00000478876 753 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AC104136.1-201ENST00000512969 394 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 LRRC34P2-201ENST00000514850 553 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RNU4-49P-201ENST00000516080 140 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 RNA5SP402-201ENST00000517148 110 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 SNORA25.17-201ENST00000517184 124 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AC025755.1-201ENST00000521306 278 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 LRRC37A5P-203ENST00000580181 585 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 MIR3942-201ENST00000585264 109 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 UBE2V2P2-201ENST00000587677 504 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL670379.10-201ENST00000604330 253 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL670379.9-201ENST00000605428 253 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL008636.1-201ENST00000625038 1018 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AL133216.2-202ENST00000634512 349 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AC002543.1-201ENST00000299783 1954 ntBASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
UPF3AQ9H1J1 AC135776.4-201ENST00000624300 1904 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 CBX3P1-201ENST00000325243 554 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RNU6-778P-201ENST00000363269 103 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 SNORD81.2-201ENST00000365153 76 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 Z98749.2-208ENST00000381646 500 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 SNORA32.2-201ENST00000384049 122 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RNU1-138P-201ENST00000384093 164 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RNU6-767P-201ENST00000384132 107 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RNU6-434P-201ENST00000384376 107 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 MIR301A-201ENST00000385261 86 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 SNORA11.4-201ENST00000408823 129 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 ZNF863P-201ENST00000426746 417 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AC007547.1-201ENST00000462177 490 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RPL23AP42-201ENST00000471152 471 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AC116337.1-201ENST00000509680 687 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RNU6-189P-201ENST00000516120 101 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 SCARNA16.3-201ENST00000516595 184 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RNU6-703P-201ENST00000516946 107 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 RNU6-548P-201ENST00000517083 115 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AC011712.1-201ENST00000588959 234 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AC002044.1-201ENST00000606707 158 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AL121757.2-201ENST00000611223 313 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 AL161629.2-201ENST00000615347 275 ntBASIC2.47□□□□□ -2.01
UPF3AQ9H1J1 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 160.2 ms