Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 RNU6-1106P-201ENST00000390845 107 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 RNU2-25P-201ENST00000411041 191 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 Z98742.3-201ENST00000418637 326 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 RPL7P37-201ENST00000425095 738 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 RPS15AP7-201ENST00000439294 405 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 RPL23AP49-201ENST00000492925 468 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 MTCYBP18-201ENST00000501056 747 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 SNORA14.1-201ENST00000516113 141 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 SCARNA17.1-201ENST00000516211 143 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 SCARNA17.2-201ENST00000516334 143 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC010186.2-204ENST00000537668 439 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 HSPE1P20-201ENST00000538133 289 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.87□□□□□ -1.95
USP44Q9H0E7 AL133241.1-201ENST00000556832 487 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC103810.1-201ENST00000579873 453 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AL359198.2-201ENST00000611836 194 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 SCARNA17.4-201ENST00000614296 143 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 MIR6766-201ENST00000622641 72 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 AC064859.1-201ENST00000624741 174 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 U4.7-201ENST00000638126 106 ntBASIC2.87□□□□□ -1.95
USP44Q9H0E7 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
USP44Q9H0E7 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP44Q9H0E7 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP44Q9H0E7 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.86□□□□□ -1.95
USP44Q9H0E7 Y_RNA.167-201ENST00000363735 109 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 RNU6-522P-201ENST00000364497 107 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 RNU6-332P-201ENST00000391193 108 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 EIF4E2P1-201ENST00000393781 255 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 U6atac.2-201ENST00000408644 118 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 Y_RNA.615-201ENST00000410769 117 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 RNA5SP492-201ENST00000411330 114 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 RPL30P16-201ENST00000419341 429 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.86□□□□□ -1.95
USP44Q9H0E7 FABP5P14-201ENST00000437273 393 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 AC004383.1-201ENST00000438135 289 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.86□□□□□ -1.95
USP44Q9H0E7 RNU7-138P-201ENST00000459479 64 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 AC080013.2-201ENST00000460866 323 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 HMGN2P26-201ENST00000463169 339 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 MTCYBP40-201ENST00000509390 1135 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.86□□□□□ -1.95
USP44Q9H0E7 RNU1-41P-201ENST00000516161 162 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 RNU1-48P-201ENST00000516400 162 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 AC087854.1-201ENST00000519706 414 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.86□□□□□ -1.95
USP44Q9H0E7 VN1R80P-201ENST00000597126 338 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 AC092807.2-201ENST00000609367 243 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
USP44Q9H0E7 AC011890.2-201ENST00000613393 294 ntBASIC2.86□□□□□ -1.95
USP44Q9H0E7 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
USP44Q9H0E7 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USP44Q9H0E7 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNU6-1010P-201ENST00000362757 107 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 Y_RNA.100-201ENST00000363141 102 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 SNORD56.5-201ENST00000364281 72 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNA5SP219-201ENST00000390940 113 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNA5SP181-201ENST00000410246 98 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNU4-26P-201ENST00000410270 107 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNA5SP508-201ENST00000411327 119 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RPL19P1-201ENST00000411635 428 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC007064.1-201ENST00000412238 351 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC074117.2-201ENST00000417130 397 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.85□□□□□ -1.95
USP44Q9H0E7 HMGB1P31-201ENST00000437242 427 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.85□□□□□ -1.95
USP44Q9H0E7 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC117503.1-201ENST00000472241 394 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RPL7P43-201ENST00000478876 753 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.85□□□□□ -1.95
USP44Q9H0E7 TRBVA-201ENST00000498804 316 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNU6-377P-201ENST00000515965 102 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 Y_RNA.665-201ENST00000516177 98 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNU6-358P-201ENST00000516564 75 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 RNU6-826P-201ENST00000516827 104 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC079598.5-201ENST00000547460 117 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 MIR4435-1-201ENST00000582552 80 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC021646.1-201ENST00000605469 484 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 AC002044.1-201ENST00000606707 158 ntBASIC2.85□□□□□ -1.95
USP44Q9H0E7 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
USP44Q9H0E7 ZNF658B-202ENST00000615961 3375 ntBASIC2.84□□□□□ -1.95
USP44Q9H0E7 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.84□□□□□ -1.95
USP44Q9H0E7 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
USP44Q9H0E7 RNU6-78P-201ENST00000362897 107 ntBASIC2.84□□□□□ -1.95
USP44Q9H0E7 SNORD114-19-201ENST00000363072 75 ntBASIC2.84□□□□□ -1.95
USP44Q9H0E7 Y_RNA.390-201ENST00000383932 102 ntBASIC2.84□□□□□ -1.95
USP44Q9H0E7 SNORD116-20-201ENST00000384529 92 ntBASIC2.84□□□□□ -1.95
USP44Q9H0E7 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
USP44Q9H0E7 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms