Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 snoU109.2-201ENST00000459316 135 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RNU7-138P-201ENST00000459479 64 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RPL23AP45-201ENST00000476406 468 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RN7SL636P-201ENST00000497504 294 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 RNU6-718P-201ENST00000516166 105 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 SNORA31.6-201ENST00000516241 130 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC092747.3-201ENST00000603769 301 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AL121917.1-203ENST00000605534 577 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 MIR7157-201ENST00000635801 60 ntBASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC3Q9BQI4 AL359854.1-201ENST00000614203 1594 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 RNU6-622P-201ENST00000384272 103 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 MTATP6P13-201ENST00000438531 667 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC133134.1-201ENST00000466800 359 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 TRBVA-201ENST00000498804 316 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 SNORA31.23-201ENST00000517219 133 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC087854.1-201ENST00000519706 414 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC079598.5-201ENST00000547460 117 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 BNIP3P25-201ENST00000596023 559 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC096772.1-201ENST00000609146 564 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC011890.2-201ENST00000613393 294 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 AC024581.2-201ENST00000619986 252 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 MIR6733-201ENST00000635723 61 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 MIR7515-201ENST00000637837 67 ntBASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC3Q9BQI4 RNU6-1010P-201ENST00000362757 107 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 Y_RNA.530-201ENST00000384587 101 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 RPS29P13-201ENST00000402041 169 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AL359511.1-201ENST00000402970 211 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 RN7SKP192-201ENST00000411291 327 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 NDUFA5P4-201ENST00000436704 385 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AC087884.1-201ENST00000469738 328 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AC117503.1-201ENST00000472241 394 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AP000852.1-201ENST00000472460 573 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AP001025.1-201ENST00000486139 332 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 RPL22P13-201ENST00000493291 347 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AC234781.5-201ENST00000508429 271 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 Y_RNA.665-201ENST00000516177 98 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AC100830.2-201ENST00000581636 240 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AC009314.1-201ENST00000603871 304 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 AC135776.4-201ENST00000624300 1904 ntBASIC2.4□□□□□ -2.03
CCDC3Q9BQI4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AL355596.1-201ENST00000565399 3996 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNA5SP432-201ENST00000362480 116 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-37P-201ENST00000362692 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNA5SP393-201ENST00000363423 117 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-11P-201ENST00000364234 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-25P-201ENST00000383873 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-1-201ENST00000383898 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-48P-201ENST00000384161 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-36P-201ENST00000384172 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-4P-201ENST00000384205 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-5P-201ENST00000384238 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-3P-201ENST00000384314 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-16P-201ENST00000384385 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-15P-201ENST00000384534 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-2-201ENST00000384627 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-29P-201ENST00000384637 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-9-201ENST00000384776 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-33P-201ENST00000384793 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 U6atac.2-201ENST00000408644 118 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNA5SP425-201ENST00000410336 112 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AL135786.1-201ENST00000415892 214 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AL117339.3-201ENST00000418733 162 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 HMGB1P31-201ENST00000437242 427 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 MTCO3P18-201ENST00000440206 761 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms