Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.13□□□□□ -2.39
USF3Q68DE3 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.13□□□□□ -2.39
USF3Q68DE3 AC023194.1-201ENST00000493084 308 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
USF3Q68DE3 PDCD5P2-201ENST00000507570 312 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 MTCYBP43-201ENST00000513621 740 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
USF3Q68DE3 RNU4-54P-201ENST00000516428 129 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.13□□□□□ -2.39
USF3Q68DE3 AL121579.1-201ENST00000555129 305 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 MIR4782-201ENST00000577987 79 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.13□□□□□ -2.39
USF3Q68DE3 MIR5094-201ENST00000578766 85 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 AP001596.2-201ENST00000608410 312 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.13□□□□□ -2.39
USF3Q68DE3 RNA5SP361-201ENST00000362686 118 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 RNU6-1019P-201ENST00000364424 107 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 MIR7-1-201ENST00000384871 110 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 SNORA48.1-201ENST00000390879 135 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC0.13□□□□□ -2.39
USF3Q68DE3 Z99497.1-201ENST00000421282 135 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 SNX2P2-201ENST00000424553 323 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 RPS25P9-201ENST00000435591 252 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 BRK1P2-201ENST00000442875 223 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 AL096829.2-201ENST00000446582 742 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 AC067940.1-201ENST00000458411 300 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC0.13□□□□□ -2.39
USF3Q68DE3 AC010587.2-201ENST00000511727 448 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.13□□□□□ -2.39
USF3Q68DE3 HMGB1P33-201ENST00000563485 527 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 BX284668.6-201ENST00000606899 438 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
USF3Q68DE3 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
USF3Q68DE3 AL596245.1-201ENST00000618994 362 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 AC009950.2-201ENST00000636548 183 ntBASIC0.13□□□□□ -2.39
USF3Q68DE3 MTND4P14-201ENST00000435799 1354 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 AL159152.1-201ENST00000635019 2587 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 RNU6-898P-201ENST00000365627 104 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 RNU6-110P-201ENST00000384508 104 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 RNU6-1176P-201ENST00000390955 107 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 RNU6-754P-201ENST00000391166 107 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
USF3Q68DE3 AL589872.1-201ENST00000426602 288 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 MTCYBP11-201ENST00000447254 1109 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.12□□□□□ -2.39
USF3Q68DE3 AC012308.1-201ENST00000451232 178 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.12□□□□□ -2.39
USF3Q68DE3 MTCYBP40-201ENST00000509390 1135 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 AP001893.2-201ENST00000526949 202 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.12□□□□□ -2.39
USF3Q68DE3 AP000763.2-201ENST00000540641 163 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.12□□□□□ -2.39
USF3Q68DE3 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.12□□□□□ -2.39
USF3Q68DE3 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.12□□□□□ -2.39
USF3Q68DE3 AC112220.2-201ENST00000605513 533 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 FAM157A-202ENST00000615155 405 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 AC106858.1-201ENST00000637497 429 ntBASIC0.12□□□□□ -2.39
USF3Q68DE3 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC0.12□□□□□ -2.39
USF3Q68DE3 RNU6-1280P-201ENST00000365211 107 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.11□□□□□ -2.39
USF3Q68DE3 MTCO1P3-201ENST00000429327 192 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC002381.1-201ENST00000447049 280 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 MTCO2P25-201ENST00000447065 681 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 OR2AQ1P-201ENST00000451972 200 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.11□□□□□ -2.39
USF3Q68DE3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.11□□□□□ -2.39
USF3Q68DE3 AC005741.1-201ENST00000511094 432 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 RNU6-1092P-201ENST00000516955 87 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 RPL30P11-203ENST00000598995 310 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC009237.15-201ENST00000610252 501 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC104465.1-201ENST00000611365 139 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
USF3Q68DE3 RNU4-12P-201ENST00000365233 139 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 MIR329-1-201ENST00000385028 80 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AL357139.1-201ENST00000407792 426 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.11□□□□□ -2.39
USF3Q68DE3 MTND2P9-201ENST00000422293 931 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AL669831.1-202ENST00000428504 417 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC092423.1-201ENST00000430165 186 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.11□□□□□ -2.39
USF3Q68DE3 RSL24D1P8-201ENST00000434442 492 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 TIMM9P1-201ENST00000436122 256 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC092170.1-201ENST00000440211 356 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC245047.7-201ENST00000440265 293 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.11□□□□□ -2.39
USF3Q68DE3 GAPDHP17-201ENST00000449858 1001 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 MTCO1P31-201ENST00000506355 492 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC118282.2-201ENST00000508739 374 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 RNU6-197P-201ENST00000516680 100 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 MRPS36P5-201ENST00000551909 298 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC0.11□□□□□ -2.39
USF3Q68DE3 AC024060.1-201ENST00000607052 494 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AL590240.4-201ENST00000616908 390 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC009509.4-201ENST00000619202 509 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 MIR8063-201ENST00000621930 81 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AC023934.1-201ENST00000574529 2389 ntBASIC0.11□□□□□ -2.39
USF3Q68DE3 AL391994.1-201ENST00000254724 282 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 RNU6-23P-201ENST00000363283 107 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 SNORD114-24-201ENST00000365029 72 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 RNU6-505P-201ENST00000384427 107 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms