Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL360182.1-201ENST00000397433 468 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 RPS29P13-201ENST00000402041 169 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 RPL7P37-201ENST00000425095 738 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 RPS27AP9-201ENST00000477681 438 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 RNU6-864P-201ENST00000516256 108 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 RN7SKP256-201ENST00000517201 314 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AP005597.4-201ENST00000526762 229 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AC021646.1-201ENST00000605469 484 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AC010329.5-201ENST00000623497 2174 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AC080128.1-201ENST00000474389 1917 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AC138915.1-201ENST00000565427 1685 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC138393.1-203ENST00000327086 343 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 RNU6-859P-201ENST00000362728 107 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.88-201ENST00000363029 99 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 RNA5SP68-201ENST00000363885 119 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 RNU6-105P-201ENST00000363909 104 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 RNU6-1329P-201ENST00000365664 107 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 SNORD21-201ENST00000383953 95 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 RNU6-214P-201ENST00000384130 107 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 MIR450B-201ENST00000401182 78 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 MIR1289-2-201ENST00000408360 111 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC138393.2-201ENST00000414742 246 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC074117.2-201ENST00000417130 397 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 RPL21P111-201ENST00000418453 477 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 UBE2V1P4-201ENST00000425374 344 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 MICF-203ENST00000432679 129 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 MTCO2P3-201ENST00000442543 421 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC046134.1-201ENST00000514454 666 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 RNU6-377P-201ENST00000515965 102 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 SCARNA17.1-201ENST00000516211 143 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 SCARNA17.2-201ENST00000516334 143 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 SNORA20.3-201ENST00000516880 132 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 IGKV3-31-201ENST00000523109 329 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AP000889.2-201ENST00000532684 490 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC087241.2-201ENST00000535801 324 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC011712.1-201ENST00000588959 234 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC009314.1-201ENST00000603871 304 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 SCARNA17.4-201ENST00000614296 143 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 MIR6817-201ENST00000615588 66 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AC007318.2-201ENST00000620999 243 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 AL109809.4-201ENST00000603520 2185 ntBASIC2.74□□□□□ -1.97
COL28A1Q2UY09 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL28A1Q2UY09 MTND5P30-201ENST00000452896 1731 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.73□□□□□ -1.97
COL28A1Q2UY09 RNU6-858P-201ENST00000362436 107 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.135-201ENST00000363439 95 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.160-201ENST00000363677 92 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.390-201ENST00000383932 102 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 RNU6-622P-201ENST00000384272 103 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 RNU6-831P-201ENST00000384548 107 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 RNA5SP390-201ENST00000410191 113 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 VN1R36P-201ENST00000414936 291 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.73□□□□□ -1.97
COL28A1Q2UY09 RN7SL633P-201ENST00000488974 297 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 SNORA31.6-201ENST00000516241 130 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 RNU6-256P-201ENST00000516747 97 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 RNU6-826P-201ENST00000516827 104 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 SNORA31.23-201ENST00000517219 133 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AC107953.1-201ENST00000522216 297 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 CKS1BP7-201ENST00000522230 235 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AC025423.5-201ENST00000550230 219 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AC023043.2-201ENST00000589678 1026 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 BNIP3P16-201ENST00000589779 534 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AL121917.1-203ENST00000605534 577 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AL022345.1-201ENST00000607292 135 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AL138726.1-201ENST00000614873 333 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AC009248.2-201ENST00000619826 254 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 AC009033.1-201ENST00000624279 431 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.73□□□□□ -1.97
COL28A1Q2UY09 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL28A1Q2UY09 ZNF72P-201ENST00000425869 1908 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.166-201ENST00000363730 102 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RNU6-1013P-201ENST00000384180 107 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 MIR181B1-201ENST00000385240 110 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RNU6-1106P-201ENST00000390845 107 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RNU6-876P-201ENST00000391295 104 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RN7SKP192-201ENST00000411291 327 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC104332.2-201ENST00000429959 156 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 IFNA20P-201ENST00000436840 528 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms