Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 Y_RNA.498-201ENST00000384460 102 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC119751.3-201ENST00000399720 670 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RNU2-23P-201ENST00000410545 195 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC069282.1-201ENST00000411911 526 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AL139421.1-201ENST00000423010 169 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 PNRC2P1-201ENST00000423940 420 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 C1DP1-201ENST00000426049 402 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 MTND2P5-201ENST00000432656 1006 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 PTGES3P1-201ENST00000439531 483 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 MTND3P4-201ENST00000453537 303 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AL049830.1-201ENST00000468034 425 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RPL7P43-201ENST00000478876 753 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AP003034.1-201ENST00000534621 422 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 SNRPGP1-201ENST00000553864 222 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 MTCYBP33-201ENST00000575007 1130 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC069304.2-201ENST00000605154 435 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC107952.2-201ENST00000606048 486 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 MIR3976-201ENST00000606807 139 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC092953.2-201ENST00000608000 699 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 Z82243.1-201ENST00000609432 473 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC024257.5-201ENST00000612739 531 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 MIR4320-201ENST00000636981 65 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC0.11□□□□□ -2.39
COL7A1Q02388 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 MTND4P21-201ENST00000453886 1357 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RNU6-414P-201ENST00000363705 104 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 SNORD114-6-201ENST00000364393 72 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 RNU6-657P-201ENST00000383904 107 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RNY1P8-201ENST00000383970 114 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RNU6-505P-201ENST00000384427 107 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 MIR7-1-201ENST00000384871 110 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 NDUFS5P1-201ENST00000405668 289 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 MIR1283-2-201ENST00000408621 87 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RNA5SP501-201ENST00000410990 112 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 RNU6-1054P-201ENST00000411293 104 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 RPS27P16-201ENST00000425758 201 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC0.11□□□□□ -2.39
COL7A1Q02388 MTCO3P5-201ENST00000433620 714 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.11□□□□□ -2.39
COL7A1Q02388 PGBD4P5-201ENST00000445958 426 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 HGF-207ENST00000453018 721 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 RPL36AP48-201ENST00000485521 314 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC108729.1-201ENST00000487812 947 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AL049874.1-201ENST00000489560 388 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 RNY4P37-201ENST00000516225 96 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC022868.1-201ENST00000517767 391 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 CYP3A52P-201ENST00000563326 91 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 EIF1P4-201ENST00000572664 335 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC136618.2-201ENST00000575091 400 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AL357094.1-201ENST00000603845 844 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC069114.2-201ENST00000604699 304 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AL162730.1-201ENST00000605734 292 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC004832.4-201ENST00000608952 331 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.11□□□□□ -2.39
COL7A1Q02388 AC010133.1-201ENST00000615809 842 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AL359314.1-201ENST00000616913 261 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 AC079416.3-201ENST00000624479 549 ntBASIC0.11□□□□□ -2.39
COL7A1Q02388 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC0.11□□□□□ -2.39
COL7A1Q02388 MIR103A1-201ENST00000362165 78 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 MIR424-201ENST00000362227 98 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 MIR302D-201ENST00000362275 68 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 Y_RNA.181-201ENST00000363872 101 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.1□□□□□ -2.39
COL7A1Q02388 RNU6-910P-201ENST00000390844 107 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 MIR888-201ENST00000401186 77 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 AL591034.2-201ENST00000402839 359 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 RNU4-27P-201ENST00000410889 139 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 MTCO2P8-201ENST00000412213 658 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.1□□□□□ -2.39
COL7A1Q02388 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.1□□□□□ -2.39
COL7A1Q02388 RPL31P54-201ENST00000429803 370 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 MTCO1P57-201ENST00000432182 261 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 USP9YP22-201ENST00000438971 294 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC0.1□□□□□ -2.39
COL7A1Q02388 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.1□□□□□ -2.39
COL7A1Q02388 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.1□□□□□ -2.39
COL7A1Q02388 RNA5SP137-201ENST00000516833 135 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 NRON-201ENST00000517270 370 ntBASIC0.1□□□□□ -2.39
COL7A1Q02388 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.1□□□□□ -2.39
COL7A1Q02388 AC104417.1-201ENST00000523974 751 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms