Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC109329.1-201ENST00000518744 317 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AC034114.1-201ENST00000520293 285 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AP005639.2-201ENST00000527592 928 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 IMMP1LP2-201ENST00000552954 492 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AC008015.1-201ENST00000555505 465 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.3□□□□□ -2.2
FOXA1P55317 AC026271.5-201ENST00000577873 130 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AC243960.4-201ENST00000600532 288 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AL670379.2-201ENST00000604983 252 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AL670379.4-201ENST00000605279 254 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AC092354.1-201ENST00000606057 376 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AL121992.2-201ENST00000606262 256 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.3□□□□□ -2.2
FOXA1P55317 AC019226.2-201ENST00000625973 424 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.3□□□□□ -2.2
FOXA1P55317 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.3□□□□□ -2.2
FOXA1P55317 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.29□□□□□ -2.2
FOXA1P55317 RNY1P12-201ENST00000364251 105 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 U3.13-201ENST00000364804 214 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 RNU2-8P-201ENST00000410727 190 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 RPL21P90-201ENST00000415692 466 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA1P55317 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA1P55317 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.29□□□□□ -2.2
FOXA1P55317 Z82205.1-201ENST00000428456 297 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA1P55317 MTCO3P5-201ENST00000433620 714 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 MTATP6P16-201ENST00000434543 526 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA1P55317 MTND1P30-201ENST00000441241 901 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 MTND6P13-201ENST00000443510 523 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 HMGB1P35-201ENST00000503360 598 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.29□□□□□ -2.2
FOXA1P55317 RNU6-970P-201ENST00000516312 107 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 RN7SKP287-201ENST00000516546 266 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 SNORA43.2-201ENST00000516652 128 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 RNU6-759P-201ENST00000516740 103 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 RNU6-232P-201ENST00000517144 64 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
FOXA1P55317 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.29□□□□□ -2.2
FOXA1P55317 OR5AL2P-201ENST00000532185 920 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 NDUFA5P6-201ENST00000542110 379 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA1P55317 AC103987.3-201ENST00000582071 292 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.29□□□□□ -2.2
FOXA1P55317 ELOCP5-201ENST00000604924 333 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AC093424.1-201ENST00000604999 338 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AL133173.2-201ENST00000614270 90 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AC009159.2-201ENST00000617603 606 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AC079248.2-201ENST00000623779 326 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AL359740.1-201ENST00000624340 592 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AC090517.3-201ENST00000625170 141 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 SCARNA4-202ENST00000625402 129 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.29□□□□□ -2.2
FOXA1P55317 MTND4P4-201ENST00000439033 1366 ntBASIC1.29□□□□□ -2.2
FOXA1P55317 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.29□□□□□ -2.2
FOXA1P55317 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
FOXA1P55317 OR4G2P-201ENST00000328113 903 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 Y_RNA.40-201ENST00000362645 93 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 RNU6-179P-201ENST00000363350 107 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 RNU6-169P-201ENST00000365336 107 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 RNU6-203P-201ENST00000384038 104 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
FOXA1P55317 SNORA40.19-201ENST00000390846 128 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 AC068050.1-201ENST00000394891 380 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 AL031577.2-201ENST00000404133 280 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.28□□□□□ -2.2
FOXA1P55317 AC096920.1-201ENST00000423991 241 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.28□□□□□ -2.2
FOXA1P55317 AC000111.3-201ENST00000433478 193 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA1P55317 HMGB1P31-201ENST00000437242 427 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA1P55317 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA1P55317 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA1P55317 AL121594.1-201ENST00000475906 575 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA1P55317 RNU6-667P-201ENST00000517186 102 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 AC106038.2-201ENST00000520706 568 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.28□□□□□ -2.2
FOXA1P55317 BNIP3P6-201ENST00000549284 499 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.28□□□□□ -2.2
FOXA1P55317 MIR4285-201ENST00000581001 85 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 AF246928.1-201ENST00000623768 87 ntBASIC1.28□□□□□ -2.2
FOXA1P55317 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
FOXA1P55317 RNU6-655P-201ENST00000362858 107 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNU6-553P-201ENST00000364047 96 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNY4P34-201ENST00000364779 95 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNU6-1274P-201ENST00000384557 107 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 Y_RNA.576-201ENST00000384781 102 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 MIR518A2-201ENST00000384966 87 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNU2-23P-201ENST00000410545 195 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNU6-321P-201ENST00000410912 106 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 RNA5SP450-201ENST00000411206 102 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.27□□□□□ -2.21
FOXA1P55317 MTCYBP5-201ENST00000423752 1135 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 MTND4P20-201ENST00000424125 869 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 MTND5P25-201ENST00000430499 799 ntBASIC1.27□□□□□ -2.21
FOXA1P55317 AL365400.1-201ENST00000431854 640 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms