Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-38P-201ENST00000384085 107 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 Y_RNA.452-201ENST00000384202 108 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 DHFRP6-201ENST00000401776 268 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AL606923.1-201ENST00000406616 190 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 MIR1302-3-201ENST00000408128 138 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 Y_RNA.615-201ENST00000410769 117 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 RNU2-68P-201ENST00000410878 191 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.03□□□□□ -2.08
COL4A4P53420 ARL5AP1-201ENST00000418991 388 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.03□□□□□ -2.08
COL4A4P53420 AC119618.1-201ENST00000434191 222 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 RPS3AP52-201ENST00000435639 297 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AL590664.1-201ENST00000448065 339 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 HMGB3P21-201ENST00000452483 547 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 RNU6-333P-201ENST00000459117 107 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AC005741.1-201ENST00000511094 432 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 RAC1P5-201ENST00000512182 576 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 RNU6-764P-201ENST00000516396 105 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 ZNF705CP-201ENST00000530515 889 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.03□□□□□ -2.08
COL4A4P53420 SCOCP1-201ENST00000554676 349 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AL117187.1-201ENST00000555482 181 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 MYL12BP1-201ENST00000569826 507 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
COL4A4P53420 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.03□□□□□ -2.08
COL4A4P53420 AL356280.1-201ENST00000603614 379 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.03□□□□□ -2.08
COL4A4P53420 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.03□□□□□ -2.08
COL4A4P53420 AC011155.2-201ENST00000623202 216 ntBASIC2.03□□□□□ -2.08
COL4A4P53420 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.03□□□□□ -2.08
COL4A4P53420 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
COL4A4P53420 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.09
COL4A4P53420 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
COL4A4P53420 MIRLET7G-201ENST00000362280 84 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU5E-8P-201ENST00000363502 116 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 SNORD113-7-201ENST00000363762 77 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-343P-201ENST00000364709 104 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNA5SP138-201ENST00000365098 114 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 MT-TR-201ENST00000387439 65 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL139397.2-201ENST00000404529 772 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL513331.1-201ENST00000411908 397 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 MTCYBP9-201ENST00000431021 303 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 Z98949.2-201ENST00000440996 144 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-1218P-201ENST00000458990 108 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 MTND4P17-201ENST00000470444 350 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC079804.2-201ENST00000490376 200 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 MLLT10P2-201ENST00000506434 249 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 SNORA25.10-201ENST00000515926 124 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-123P-201ENST00000516163 102 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-864P-201ENST00000516256 108 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 SNORA25.15-201ENST00000516487 89 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-714P-201ENST00000516963 103 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RN7SKP40-201ENST00000517211 242 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 AL121917.1-203ENST00000605534 577 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL022345.1-201ENST00000607292 135 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 Z69720.2-201ENST00000624755 279 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
COL4A4P53420 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 MTND5P10-201ENST00000603719 1809 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
COL4A4P53420 Y_RNA.191-201ENST00000363972 113 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-1207P-201ENST00000384343 107 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-308P-201ENST00000390957 107 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNY4P36-201ENST00000391116 96 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 MRPL42P3-201ENST00000401492 326 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RPL37P10-201ENST00000412884 288 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 OR6C66P-201ENST00000414917 930 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC092832.1-201ENST00000422934 400 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC018865.2-201ENST00000423631 129 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC096632.1-201ENST00000427395 310 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
COL4A4P53420 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC073415.1-201ENST00000449240 153 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU7-182P-201ENST00000459009 62 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 Y_RNA.653-201ENST00000459091 95 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU7-66P-201ENST00000459469 62 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL135752.1-201ENST00000479477 471 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC233702.1-201ENST00000482905 502 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC083904.1-201ENST00000487828 231 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms