Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC109479.2-201ENST00000517842 174 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.83□□□□□ -1.96
SHMT1P34896 AC107953.1-201ENST00000522216 297 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC021269.2-201ENST00000532318 330 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AC087241.2-201ENST00000535801 324 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AL121579.1-201ENST00000555129 305 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 MTCO3P13-201ENST00000577757 781 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 AL355877.2-201ENST00000603670 358 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 RNU6-6P-201ENST00000606623 107 ntBASIC2.83□□□□□ -1.96
SHMT1P34896 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SHMT1P34896 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.83□□□□□ -1.96
SHMT1P34896 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
SHMT1P34896 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.83□□□□□ -1.96
SHMT1P34896 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
SHMT1P34896 SNORA72.1-201ENST00000363485 129 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 RNU5E-7P-201ENST00000365290 117 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 RNU6-128P-201ENST00000383976 107 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 RNY3P14-201ENST00000384309 102 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 RNU6-831P-201ENST00000384548 107 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 MIR592-201ENST00000384959 97 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 MTCO3P46-201ENST00000425787 232 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 AL359672.1-201ENST00000442302 409 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 Z96811.1-201ENST00000445880 108 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 PMCHL2-203ENST00000457791 237 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.82□□□□□ -1.96
SHMT1P34896 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.82□□□□□ -1.96
SHMT1P34896 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.82□□□□□ -1.96
SHMT1P34896 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.82□□□□□ -1.96
SHMT1P34896 AC005261.5-201ENST00000596280 355 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 AC019159.1-201ENST00000605094 187 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 AC002064.3-201ENST00000623448 346 ntBASIC2.82□□□□□ -1.96
SHMT1P34896 RNU6-845P-201ENST00000362578 103 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 RNU6-942P-201ENST00000363002 107 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 Y_RNA.303-201ENST00000364998 94 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 RNU6-214P-201ENST00000384130 107 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 RNU6-19P-201ENST00000384718 107 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 RN7SKP223-201ENST00000410582 62 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 SNORD56-201ENST00000413522 71 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.81□□□□□ -1.96
SHMT1P34896 AC009414.1-201ENST00000427200 443 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.81□□□□□ -1.96
SHMT1P34896 AL365400.1-201ENST00000431854 640 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.81□□□□□ -1.96
SHMT1P34896 MTND4LP16-201ENST00000440828 295 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.81□□□□□ -1.96
SHMT1P34896 MTND4P18-201ENST00000447010 465 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
SHMT1P34896 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.81□□□□□ -1.96
SHMT1P34896 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.81□□□□□ -1.96
SHMT1P34896 RAC1P5-201ENST00000512182 576 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 RNU4-49P-201ENST00000516080 140 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 RNU6-864P-201ENST00000516256 108 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 RNA5SP281-201ENST00000516504 135 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC134698.4-201ENST00000523451 826 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 HSPE1P20-201ENST00000538133 289 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 CR383656.8-201ENST00000549046 145 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
SHMT1P34896 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.81□□□□□ -1.96
SHMT1P34896 AC005730.3-201ENST00000583067 366 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC020895.1-201ENST00000595362 272 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC091152.3-201ENST00000604227 325 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC123912.5-201ENST00000605470 343 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
SHMT1P34896 AC011890.2-201ENST00000613393 294 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC022306.2-201ENST00000617563 647 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 AC010378.1-201ENST00000619270 362 ntBASIC2.81□□□□□ -1.96
SHMT1P34896 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
SHMT1P34896 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
SHMT1P34896 MTND5P6-201ENST00000422338 1798 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
SHMT1P34896 AC138393.1-203ENST00000327086 343 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 RNU6-1252P-201ENST00000363054 104 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 RNU6-1106P-201ENST00000390845 107 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 FTH1P15-201ENST00000406984 280 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 HMGN2P35-201ENST00000412164 270 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 MTND3P8-201ENST00000412909 339 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 VN1R36P-201ENST00000414936 291 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 PTGES3P4-201ENST00000426243 356 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 AL358075.3-201ENST00000426289 226 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.8□□□□□ -1.96
SHMT1P34896 GSTA11P-201ENST00000452866 669 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 AL441985.1-201ENST00000457727 251 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 RNU6-329P-201ENST00000459618 107 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 MRPL42P6-201ENST00000486397 371 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.8□□□□□ -1.96
SHMT1P34896 SNORA43.2-201ENST00000516652 128 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 RNU6-256P-201ENST00000516747 97 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 ACA59.2-201ENST00000517061 156 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 COPS8P3-201ENST00000526024 482 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 AC025423.5-201ENST00000550230 219 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 AC100830.2-201ENST00000581636 240 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.8□□□□□ -1.96
SHMT1P34896 AL022345.1-201ENST00000607292 135 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.8□□□□□ -1.96
SHMT1P34896 FAM157A-202ENST00000615155 405 ntBASIC2.8□□□□□ -1.96
SHMT1P34896 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.8□□□□□ -1.96
SHMT1P34896 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
SHMT1P34896 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.8□□□□□ -1.96
SHMT1P34896 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms