Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC025465.4-201ENST00000513422 638 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 Y_RNA.687-201ENST00000516558 91 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 RNU6-358P-201ENST00000516564 75 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AC006199.1-201ENST00000548728 219 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 MTCO3P23-201ENST00000561363 289 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AC060780.3-201ENST00000589464 80 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AL121757.2-201ENST00000611223 313 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AC009033.1-201ENST00000624279 431 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 CASC19-280ENST00000642102 1351 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC9P31274 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
HOXC9P31274 MIR6073-201ENST00000352083 89 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 RNU6-1252P-201ENST00000363054 104 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 RNU1-138P-201ENST00000384093 164 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 Y_RNA.480-201ENST00000384364 102 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 MIR518D-201ENST00000385014 87 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AL356776.1-201ENST00000406574 447 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 RNA5SP118-201ENST00000410385 109 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXC9P31274 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXC9P31274 AC117503.1-201ENST00000472241 394 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AC018710.1-201ENST00000506509 158 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 SNORA19.2-201ENST00000516013 114 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AF235103.2-201ENST00000525753 346 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AC023050.3-201ENST00000541142 333 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC9P31274 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC9P31274 BNIP3P25-201ENST00000596023 559 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AC005261.5-201ENST00000596280 355 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 CTHRC1P1-201ENST00000605383 469 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 MIR6134-201ENST00000617606 109 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AC103705.1-201ENST00000619013 241 ntBASIC2.81□□□□□ -1.96
HOXC9P31274 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXC9P31274 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-37P-201ENST00000362692 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 Y_RNA.157-201ENST00000363638 102 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 Y_RNA.167-201ENST00000363735 109 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-11P-201ENST00000364234 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-1280P-201ENST00000365211 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-25P-201ENST00000383873 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-1-201ENST00000383898 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 SNORA32.2-201ENST00000384049 122 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-48P-201ENST00000384161 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-36P-201ENST00000384172 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-4P-201ENST00000384205 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-5P-201ENST00000384238 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-72P-201ENST00000384285 79 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-3P-201ENST00000384314 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-16P-201ENST00000384385 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-15P-201ENST00000384534 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-2-201ENST00000384627 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-29P-201ENST00000384637 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-9-201ENST00000384776 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-33P-201ENST00000384793 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
HOXC9P31274 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXC9P31274 AC104332.2-201ENST00000429959 156 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 AL161651.1-201ENST00000440882 223 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 AC007547.1-201ENST00000462177 490 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 PRDX4P1-201ENST00000507189 574 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 AC098799.2-201ENST00000509466 868 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC9P31274 RNA5SP385-201ENST00000515947 110 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 SNORA14.1-201ENST00000516113 141 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-56P-201ENST00000516986 93 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 SNORA25.17-201ENST00000517184 124 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXC9P31274 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC9P31274 AC123912.5-201ENST00000605470 343 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 AC087045.1-201ENST00000605856 382 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 RNU6-6P-201ENST00000606623 107 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 AL357078.3-201ENST00000607528 618 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 UCA1.1-201ENST00000620952 75 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 AC006504.8-201ENST00000621046 635 ntBASIC2.8□□□□□ -1.96
HOXC9P31274 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXC9P31274 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
HOXC9P31274 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
HOXC9P31274 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
HOXC9P31274 AC138393.1-203ENST00000327086 343 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 RNU6-858P-201ENST00000362436 107 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXC9P31274 U3.37-201ENST00000408528 213 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 AC009161.1-201ENST00000417306 376 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXC9P31274 RPL23AP42-201ENST00000471152 471 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 AC026801.1-201ENST00000497178 464 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXC9P31274 RNU6-295P-201ENST00000516901 104 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 BTF3P12-201ENST00000519620 469 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 RNU6-323P-201ENST00000521915 107 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 AP000889.2-201ENST00000532684 490 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXC9P31274 MIR3941-201ENST00000582572 103 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 AL356575.1-201ENST00000603008 283 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 APOOP1-201ENST00000604695 592 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXC9P31274 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.79□□□□□ -1.96
HOXC9P31274 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms