Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 BX276092.3-201ENST00000424182 230 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC092047.1-201ENST00000424997 240 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 RPL21P40-201ENST00000428586 483 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC022018.1-201ENST00000430685 241 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 RPL23AP50-201ENST00000434149 455 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD9P28356 PIGFP3-201ENST00000441918 722 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD9P28356 AC025750.2-201ENST00000442609 450 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 CECR9-201ENST00000453421 199 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC010099.1-201ENST00000455434 375 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 RPL23AP14-201ENST00000468281 468 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXD9P28356 AC022447.4-201ENST00000504053 364 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 ACA59.1-201ENST00000515966 143 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 RNU4-77P-201ENST00000516692 156 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 RNU6-928P-201ENST00000516876 104 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 Y_RNA.721-201ENST00000517207 102 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC008269.2-201ENST00000561915 1105 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC113195.1-201ENST00000579952 141 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC136601.2-201ENST00000604356 474 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC018889.1-201ENST00000605372 397 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC005014.2-201ENST00000607795 599 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD9P28356 MIR7153-201ENST00000637758 57 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 AC233263.6-201ENST00000631132 1963 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD9P28356 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD9P28356 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-37P-201ENST00000362692 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 Y_RNA.153-201ENST00000363615 91 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-11P-201ENST00000364234 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-7-201ENST00000364784 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 U8.8-201ENST00000365399 135 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-8-201ENST00000365467 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-25P-201ENST00000383873 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-1-201ENST00000383898 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-48P-201ENST00000384161 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-36P-201ENST00000384172 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-4P-201ENST00000384205 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-5P-201ENST00000384238 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-3P-201ENST00000384314 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-16P-201ENST00000384385 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-790P-201ENST00000384479 105 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-15P-201ENST00000384534 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-2-201ENST00000384627 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-29P-201ENST00000384637 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-9-201ENST00000384776 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-33P-201ENST00000384793 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 Y_RNA.577-201ENST00000384794 101 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 AL513475.1-201ENST00000406602 315 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD9P28356 MRPS18CP6-201ENST00000423587 223 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 AL583843.1-201ENST00000456070 346 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 KC877373.1-201ENST00000479066 408 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD9P28356 AC068657.1-201ENST00000520807 306 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 AP000889.1-201ENST00000530968 660 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD9P28356 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXD9P28356 MIR3149-201ENST00000584629 83 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 AC006006.1-201ENST00000603082 144 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 PRR13P7-201ENST00000605538 430 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 RNU6-6P-201ENST00000606623 107 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 AC138627.2-201ENST00000624202 601 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 AL606534.2-204ENST00000635008 178 ntBASIC3.04□□□□□ -1.92
HOXD9P28356 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD9P28356 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HOXD9P28356 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD9P28356 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXD9P28356 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD9P28356 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD9P28356 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXD9P28356 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD9P28356 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.03□□□□□ -1.92
HOXD9P28356 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD9P28356 RPL9P7-201ENST00000330965 580 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 Y_RNA.47-201ENST00000362697 108 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 Y_RNA.149-201ENST00000363558 117 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 Y_RNA.401-201ENST00000383965 117 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 RNU6-166P-201ENST00000384371 107 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
HOXD9P28356 AL591034.2-201ENST00000402839 359 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD9P28356 AC096644.2-201ENST00000429278 159 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 RPS15AP10-201ENST00000432472 382 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD9P28356 AL513043.1-201ENST00000439124 535 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 Z82210.1-201ENST00000440037 231 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD9P28356 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD9P28356 AC013470.1-201ENST00000453438 462 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD9P28356 AC112492.4-201ENST00000456549 352 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD9P28356 snoU13.28-201ENST00000459235 104 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 RPL9P9-202ENST00000466501 579 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 MTATP8P1-201ENST00000467115 207 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms