Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC008993.2-201ENST00000631744 806 ntBASIC1.27□□□□□ -2.21
CPSF4O95639 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.27□□□□□ -2.21
CPSF4O95639 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CPSF4O95639 SNORD56.1-201ENST00000362913 68 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 RNU4-42P-201ENST00000364738 142 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.26□□□□□ -2.21
CPSF4O95639 RNU6-116P-201ENST00000384042 109 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 RNU6-297P-201ENST00000384636 107 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 MT-TH-201ENST00000387441 69 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 MIR758-201ENST00000390227 88 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CPSF4O95639 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CPSF4O95639 HMGN2P39-201ENST00000398005 273 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 RNU6-387P-201ENST00000411331 105 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 OR6C66P-201ENST00000414917 930 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.26□□□□□ -2.21
CPSF4O95639 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.26□□□□□ -2.21
CPSF4O95639 RPL31P35-201ENST00000431058 377 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AL365400.1-201ENST00000431854 640 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.26□□□□□ -2.21
CPSF4O95639 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC1.26□□□□□ -2.21
CPSF4O95639 AL033528.1-201ENST00000453780 140 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 RPL23AP3-201ENST00000453844 468 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 snoU109.1-201ENST00000459339 135 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AL121594.1-201ENST00000475906 575 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.26□□□□□ -2.21
CPSF4O95639 MTCO3P9-201ENST00000506989 781 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AC096745.1-201ENST00000509945 370 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 RNA5SP137-201ENST00000516833 135 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 RNU1-92P-201ENST00000517017 135 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 Y_RNA.717-201ENST00000517106 92 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AP003033.1-201ENST00000527244 415 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.26□□□□□ -2.21
CPSF4O95639 OR5AL2P-201ENST00000532185 920 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.26□□□□□ -2.21
CPSF4O95639 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.26□□□□□ -2.21
CPSF4O95639 MIR5692A1-201ENST00000580523 69 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 MIR4303-201ENST00000581299 66 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AC103987.3-201ENST00000582071 292 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.26□□□□□ -2.21
CPSF4O95639 RMST_6.1-201ENST00000611980 203 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AP001506.1-201ENST00000615444 211 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 RMST_4.1-201ENST00000616886 107 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 AC090517.3-201ENST00000625170 141 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 MTND5P17-201ENST00000418405 1603 ntBASIC1.26□□□□□ -2.21
CPSF4O95639 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.25□□□□□ -2.21
CPSF4O95639 RNU6-655P-201ENST00000362858 107 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RNU6-1274P-201ENST00000384557 107 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 SNORA67.5-201ENST00000391036 107 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 SNORA26.8-201ENST00000391306 124 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RAP1BP3-201ENST00000407180 549 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RNU2-3P-201ENST00000410144 191 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RNA5SP390-201ENST00000410191 113 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RNU2-23P-201ENST00000410545 195 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.25□□□□□ -2.21
CPSF4O95639 CYCSP33-201ENST00000414485 327 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.25□□□□□ -2.21
CPSF4O95639 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC1.25□□□□□ -2.21
CPSF4O95639 MTND2P4-201ENST00000445034 1004 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.25□□□□□ -2.21
CPSF4O95639 AC006026.2-201ENST00000457376 180 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RN7SL429P-201ENST00000479090 223 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RN7SL489P-201ENST00000486185 223 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RN7SL327P-201ENST00000488659 223 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.25□□□□□ -2.21
CPSF4O95639 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.25□□□□□ -2.21
CPSF4O95639 RNU6-410P-201ENST00000517006 107 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RNU6-667P-201ENST00000517186 102 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.25□□□□□ -2.21
CPSF4O95639 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.25□□□□□ -2.21
CPSF4O95639 AP005639.2-201ENST00000527592 928 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
CPSF4O95639 AP002453.2-201ENST00000533503 320 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 NDUFA5P6-201ENST00000542110 379 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.25□□□□□ -2.21
CPSF4O95639 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.25□□□□□ -2.21
CPSF4O95639 AC012414.6-201ENST00000568241 401 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AC137800.2-201ENST00000574375 120 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AC243960.4-201ENST00000600532 288 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 CLIC4P2-201ENST00000601934 717 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 RN7SL853P-201ENST00000617250 223 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AL603755.1-201ENST00000619504 163 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 AC011155.2-201ENST00000623202 216 ntBASIC1.25□□□□□ -2.21
CPSF4O95639 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.25□□□□□ -2.21
CPSF4O95639 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
CPSF4O95639 ZNF209P-201ENST00000593450 2304 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 FARSBP1-201ENST00000435808 1778 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 RNU6-212P-201ENST00000362642 104 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 RNU6-78P-201ENST00000362897 107 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 Y_RNA.169-201ENST00000363745 96 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 SNORA62.1-201ENST00000364287 154 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 U3.13-201ENST00000364804 214 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 RNU6-74P-201ENST00000384235 107 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 RNU6-550P-201ENST00000391057 101 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 RNU2-48P-201ENST00000410694 191 ntBASIC1.24□□□□□ -2.21
CPSF4O95639 RNU6-607P-201ENST00000411283 108 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 136.3 ms