Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Y_RNA.582-201ENST00000391023 95 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 AC068781.1-201ENST00000488231 618 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 MTCYBP40-201ENST00000509390 1135 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 MTCO3P7-201ENST00000510008 774 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 HMGB3P3-201ENST00000510526 400 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 MTATP6P3-201ENST00000581686 676 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 AC245884.12-201ENST00000615364 59 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 AC007792.1-201ENST00000623023 402 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 AP003400.5-201ENST00000624827 617 ntBASIC2.11□□□□□ -2.07
LHX3Q9UBR4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LHX3Q9UBR4 MTND4P14-201ENST00000435799 1354 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AL139276.1-201ENST00000311910 1001 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 Y_RNA.1-201ENST00000352915 104 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 RNU2-2P-201ENST00000410396 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 RNU2-23P-201ENST00000410545 195 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AL353193.1-201ENST00000421444 268 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 MTCYBP8-201ENST00000422855 651 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 MTCO2P19-201ENST00000427513 598 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC016691.1-201ENST00000441321 413 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 PRPS1P1-201ENST00000445305 876 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 SNRPFP3-201ENST00000457792 225 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 SCARNA18-201ENST00000459004 134 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 RNU7-63P-201ENST00000459054 62 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC108078.1-201ENST00000508073 725 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 RNU6-405P-201ENST00000516637 110 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 RN7SKP219-201ENST00000516825 296 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 IGKV3-31-201ENST00000523109 329 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AP005435.4-201ENST00000529514 284 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AL138976.2-201ENST00000563989 694 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC087683.1-201ENST00000591187 441 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC091805.2-201ENST00000603848 235 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.15-201ENST00000611544 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 Z99129.1-201ENST00000612510 255 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.16-201ENST00000613119 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.12-201ENST00000613778 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.20-201ENST00000613956 192 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.9-201ENST00000615427 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.11-201ENST00000616345 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.2-201ENST00000616535 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.3-201ENST00000617785 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.19-201ENST00000618602 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 RNU2-1-201ENST00000618664 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.6-201ENST00000619225 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.5-201ENST00000619465 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC048344.4-201ENST00000619744 527 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 U2.10-201ENST00000620268 191 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC022418.1-201ENST00000624118 445 ntBASIC2.1□□□□□ -2.07
LHX3Q9UBR4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
LHX3Q9UBR4 AC005336.3-201ENST00000623833 2679 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU6-529P-201ENST00000363383 104 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU6-527P-201ENST00000363425 104 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 SNORA3A-201ENST00000364113 130 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU6-1042P-201ENST00000384204 107 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU6-517P-201ENST00000384362 110 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 Y_RNA.480-201ENST00000384364 102 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU1-148P-201ENST00000384472 162 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU6-1127P-201ENST00000384580 107 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 MIR561-201ENST00000385216 97 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU4-26P-201ENST00000410270 107 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU2-66P-201ENST00000410650 161 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU4-55P-201ENST00000410731 137 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AL663109.1-201ENST00000411498 844 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AL591043.1-201ENST00000432461 424 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC009238.1-201ENST00000442165 424 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 IFNA11P-201ENST00000446352 526 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC009237.6-201ENST00000446969 424 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 HMGB1P29-201ENST00000505659 499 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC079140.5-201ENST00000507882 310 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC091133.4-201ENST00000511142 308 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 RNU2-69P-201ENST00000516061 100 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 SNORA31.11-201ENST00000516528 139 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC078795.2-201ENST00000602835 1252 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 NDUFA8P1-201ENST00000605525 367 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC245008.1-201ENST00000608123 476 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC009090.3-201ENST00000616553 565 ntBASIC2.09□□□□□ -2.07
LHX3Q9UBR4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.09□□□□□ -2.07
LHX3Q9UBR4 U4.7-201ENST00000638126 106 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms