Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL353997.1-201ENST00000432936 108 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 RPS15AP5-201ENST00000436276 388 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AC006445.1-201ENST00000491925 405 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.661-201ENST00000516003 99 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 RNU6-988P-201ENST00000519081 107 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 CR383656.8-201ENST00000549046 145 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 BNIP3P16-201ENST00000589779 534 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AC006504.6-201ENST00000590142 199 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AC005014.2-201ENST00000607795 599 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AC241585.2-209ENST00000638217 143 ntBASIC3.39□□□□□ -1.87
TDP1Q9NUW8 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.39□□□□□ -1.87
TDP1Q9NUW8 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.38□□□□□ -1.87
TDP1Q9NUW8 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
TDP1Q9NUW8 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.38□□□□□ -1.87
TDP1Q9NUW8 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.422-201ENST00000384054 114 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.496-201ENST00000384444 101 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.533-201ENST00000384596 114 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 UBA52P6-201ENST00000399822 382 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 MCFD2P1-201ENST00000417812 300 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 EIF4EP2-201ENST00000422816 654 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 MTND2P23-201ENST00000422990 651 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.38□□□□□ -1.87
TDP1Q9NUW8 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.38□□□□□ -1.87
TDP1Q9NUW8 NIPA2P5-201ENST00000452282 464 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 RN7SL863P-201ENST00000462370 296 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 AP002884.2-201ENST00000471647 395 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 MED28P2-201ENST00000475771 317 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 RNA5SP341-201ENST00000516261 117 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 SUB1P3-201ENST00000564581 315 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 MIR4738-201ENST00000579134 87 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.38□□□□□ -1.87
TDP1Q9NUW8 AP001836.1-201ENST00000604675 523 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 uc_338.1-201ENST00000612113 180 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 HMGB1P24-202ENST00000615653 685 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 MTND5P9-201ENST00000503854 1755 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 AL021368.2-201ENST00000606125 5352 ntBASIC3.38□□□□□ -1.87
TDP1Q9NUW8 AC007256.1-201ENST00000392253 2765 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 MIR422A-201ENST00000362286 90 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 RNU1-70P-201ENST00000362618 164 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 SNORD50.1-201ENST00000362987 71 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 SNORA63C-201ENST00000364578 129 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AP000275.1-201ENST00000411943 390 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC074117.2-201ENST00000417130 397 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 NUP35P1-201ENST00000422734 947 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC008267.5-201ENST00000424928 265 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AL353705.1-201ENST00000433468 480 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AL161651.1-201ENST00000440882 223 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC243964.1-201ENST00000441814 261 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC124916.1-201ENST00000444020 547 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 MTND4P19-201ENST00000446659 478 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 RPS4XP2-201ENST00000458402 793 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 RNU6-327P-201ENST00000516270 127 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 ACA59.2-201ENST00000517061 156 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 RNU6-1231P-201ENST00000517185 103 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 IGHV3-76-201ENST00000522465 295 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC009163.5-201ENST00000575421 637 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 MIR5696-201ENST00000578474 85 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 MIR4474-201ENST00000579189 78 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC083806.3-201ENST00000614016 455 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC007485.1-201ENST00000616755 206 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC091925.1-201ENST00000623204 462 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 AC018692.3-201ENST00000623929 123 ntBASIC3.37□□□□□ -1.87
TDP1Q9NUW8 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.37□□□□□ -1.87
TDP1Q9NUW8 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 SNORD56.1-201ENST00000362913 68 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 RNY1P16-201ENST00000363063 111 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 Y_RNA.428-201ENST00000384078 102 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 RNY1P14-201ENST00000384426 108 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 RNU6-738P-201ENST00000384531 106 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 RNU6-1160P-201ENST00000384546 104 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 RNU2-49P-201ENST00000410666 184 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AL356968.1-201ENST00000416622 474 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AC245291.1-201ENST00000419501 328 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AL031183.1-201ENST00000457667 207 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 RPL17P19-201ENST00000489069 552 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.36□□□□□ -1.87
TDP1Q9NUW8 SNORA31.21-201ENST00000517180 77 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 SNORA31.23-201ENST00000517219 133 ntBASIC3.36□□□□□ -1.87
TDP1Q9NUW8 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms