Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SCOCP1-201ENST00000554676 349 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-1Q99801 ELOCP5-201ENST00000604924 333 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC009033.1-201ENST00000624279 431 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-1Q99801 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-1Q99801 RBBP8P1-201ENST00000449447 1844 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC096644.4-201ENST00000563417 2912 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.03
NKX3-1Q99801 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
NKX3-1Q99801 SNORD56.1-201ENST00000362913 68 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 Y_RNA.100-201ENST00000363141 102 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 RNU6-336P-201ENST00000364891 107 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 RNU6-1180P-201ENST00000364935 107 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 RNU1-109P-201ENST00000383960 147 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 RNU6-843P-201ENST00000384454 104 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC074117.2-201ENST00000417130 397 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 AL117339.3-201ENST00000418733 162 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 Z98742.2-201ENST00000431564 187 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
NKX3-1Q99801 MTCO3P18-201ENST00000440206 761 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 SNORA59A-201ENST00000459326 152 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC008628.2-201ENST00000502605 298 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 RNU6-377P-201ENST00000515965 102 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 RNU6-1088P-201ENST00000516850 104 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC026464.5-201ENST00000562497 722 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.03
NKX3-1Q99801 AL133216.2-202ENST00000634512 349 ntBASIC2.34□□□□□ -2.03
NKX3-1Q99801 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
NKX3-1Q99801 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
NKX3-1Q99801 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 SNORD113-7-201ENST00000363762 77 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 SNORA80A-201ENST00000363922 136 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 RNU1-112P-201ENST00000364401 164 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 Y_RNA.279-201ENST00000364763 95 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 Y_RNA.301-201ENST00000364990 103 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 RNY3P14-201ENST00000384309 102 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 MIR627-201ENST00000384979 97 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 MIR147B-201ENST00000390185 80 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 AL139095.1-201ENST00000404326 391 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 AC009161.1-201ENST00000417306 376 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 AL590632.1-201ENST00000424289 371 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 OSTCP8-201ENST00000445117 448 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
NKX3-1Q99801 PMCHL2-203ENST00000457791 237 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 AC133134.1-201ENST00000466800 359 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 RNA5SP367-201ENST00000516557 118 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 RNU6-256P-201ENST00000516747 97 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 SNORA20.3-201ENST00000516880 132 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 RN7SKP256-201ENST00000517201 314 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 CKS1BP7-201ENST00000522230 235 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 AC079600.2-201ENST00000550076 130 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 MIR4635-201ENST00000583759 79 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 AL138726.1-201ENST00000614873 333 ntBASIC2.33□□□□□ -2.04
NKX3-1Q99801 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.33□□□□□ -2.04
NKX3-1Q99801 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 CBX3P1-201ENST00000325243 554 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 Y_RNA.88-201ENST00000363029 99 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 RNU6-527P-201ENST00000363425 104 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 RNU6-1329P-201ENST00000365664 107 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 MIR592-201ENST00000384959 97 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AL445529.1-201ENST00000398713 389 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AL356057.3-201ENST00000402607 340 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 RPL21P111-201ENST00000418453 477 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AL139132.1-201ENST00000431587 344 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC087499.2-201ENST00000432861 149 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 IFNA20P-201ENST00000436840 528 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC107083.1-201ENST00000439643 279 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 AL359672.1-201ENST00000442302 409 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 RPL32P28-201ENST00000443577 397 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC013470.1-201ENST00000453438 462 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.32□□□□□ -2.04
NKX3-1Q99801 RNU6-329P-201ENST00000459618 107 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 TRBVA-201ENST00000498804 316 ntBASIC2.32□□□□□ -2.04
NKX3-1Q99801 SEM1P1-201ENST00000506694 209 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms