Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 BX510359.3-201ENST00000422168 306 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 C4BPAP2-201ENST00000428434 478 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AP002770.2-201ENST00000543613 532 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AL606490.9-201ENST00000603331 271 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AL021879.1-201ENST00000611756 288 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AC008121.3-201ENST00000618726 433 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 MIR6891-201ENST00000618788 93 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 MIR7515-201ENST00000637837 67 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 AL513302.2-201ENST00000562313 1842 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 INTS6P1-201ENST00000504674 2530 ntBASIC3.23□□□□□ -1.89
CLRN3Q8NCR9 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AC092435.3-201ENST00000565538 3654 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 SNORA60-201ENST00000362396 134 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 RNU6-1309P-201ENST00000363305 108 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 Y_RNA.153-201ENST00000363615 91 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AC068538.1-201ENST00000376856 336 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 RNU1-106P-201ENST00000384382 164 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 RNU6-159P-201ENST00000391080 106 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 RNU6-1093P-201ENST00000391194 107 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 MIR548F4-201ENST00000408515 105 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 EIF1P2-201ENST00000428233 350 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 H2AFZP6-201ENST00000444403 394 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AC007215.1-201ENST00000464893 276 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 RNA5SP380-201ENST00000517190 98 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AC022868.1-201ENST00000517767 391 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 HSPE1P20-201ENST00000538133 289 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 PRR13P7-201ENST00000605538 430 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 MIR7155-201ENST00000615925 56 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLRN3Q8NCR9 AC069528.2-201ENST00000624849 1991 ntBASIC3.21□□□□□ -1.89
CLRN3Q8NCR9 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
CLRN3Q8NCR9 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC125257.1-201ENST00000560400 2930 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 MIR29B2-201ENST00000385055 81 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AL645927.1-201ENST00000396783 406 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 MIR1289-1-201ENST00000408836 144 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 RNA5SP201-201ENST00000410316 124 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 SDAD1P3-201ENST00000427380 333 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 RPL23AP22-201ENST00000437556 453 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 RPS15AP7-201ENST00000439294 405 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC112498.1-201ENST00000444401 332 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC096638.1-201ENST00000444678 216 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 U8.20-201ENST00000459445 131 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC010401.1-201ENST00000463867 348 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 RN7SL601P-201ENST00000471221 293 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 RN7SL442P-201ENST00000473804 320 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 RPL23AP70-201ENST00000483361 460 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.713-201ENST00000517013 96 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC034114.1-201ENST00000520293 285 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC044860.2-201ENST00000561005 179 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 RPL30P11-203ENST00000598995 310 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC010620.2-201ENST00000600135 313 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AL121655.1-201ENST00000605811 308 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 PCGEM1.1-201ENST00000613431 131 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC005296.1-201ENST00000616145 209 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 AC018445.2-201ENST00000622987 260 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 CCT5-215ENST00000625723 135 ntTSL 5 BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 SDAD1P1-202ENST00000524156 2051 ntBASIC3.21□□□□□ -1.9
CLRN3Q8NCR9 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.133-201ENST00000363428 110 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 Y_RNA.149-201ENST00000363558 117 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 U3.9-201ENST00000363823 204 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 SNORA73.2-201ENST00000364946 201 ntBASIC3.2□□□□□ -1.9
CLRN3Q8NCR9 MIR10B-201ENST00000385011 110 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms