Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 AC004925.1-201ENST00000624256 2706 ntBASIC4.23□□□□□ -1.73
USHBP1Q8N6Y0 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 Y_RNA.183-201ENST00000363882 113 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-335P-201ENST00000364563 113 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 RNU1-140P-201ENST00000365040 165 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-827P-201ENST00000365553 106 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 RNU6-629P-201ENST00000384061 103 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 SNORA7.4-201ENST00000384249 137 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 AL592148.1-201ENST00000413568 445 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 AC139712.2-201ENST00000424302 339 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 MTND2P29-201ENST00000438595 412 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 LINC01399-202ENST00000458450 244 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 TRBVB-201ENST00000477100 408 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 AC025465.3-201ENST00000510570 311 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 SNRPGP15-201ENST00000600149 222 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 AL355877.2-201ENST00000603670 358 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 AC009314.1-201ENST00000603871 304 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 uc_338.25-201ENST00000613756 156 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 CEP170P1-201ENST00000502249 4587 ntBASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USHBP1Q8N6Y0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 Y_RNA.518-201ENST00000384552 113 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AL031121.1-201ENST00000406553 254 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 Y_RNA.592-201ENST00000410274 109 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 RAC1P3-201ENST00000416129 580 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 TOMM22P1-201ENST00000418578 312 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 RPL23AP82-202ENST00000427528 469 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AL590664.1-201ENST00000448065 339 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AP000873.1-201ENST00000463987 400 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 CENPBD1P1-201ENST00000464061 469 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AC078817.1-201ENST00000492623 435 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 Y_RNA.673-201ENST00000516306 88 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 RNU6-570P-201ENST00000517051 105 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AC034114.1-201ENST00000520293 285 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AP004371.1-201ENST00000525240 214 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 ATP5F1P5-201ENST00000526403 760 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 SDR42E1P4-201ENST00000620894 481 ntBASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
USHBP1Q8N6Y0 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 RNU4-61P-201ENST00000411243 107 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 AC002075.2-201ENST00000425207 252 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 TOMM20P4-201ENST00000427861 435 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 RPS6P12-201ENST00000432491 726 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 AC107083.1-201ENST00000439643 279 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 FABP5P15-201ENST00000453566 214 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 RPL23AP67-201ENST00000465341 474 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 RPL23AP45-201ENST00000476406 468 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 AL160314.1-201ENST00000490836 438 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 HMGB1P35-201ENST00000503360 598 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 SCARNA15.2-201ENST00000516409 127 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 AC091144.1-201ENST00000519573 138 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 MIR7106-201ENST00000612419 65 ntBASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.2□□□□□ -1.74
USHBP1Q8N6Y0 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AF117829.1-206ENST00000621883 3802 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 RNU6-212P-201ENST00000362642 104 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 RNU1-76P-201ENST00000362903 159 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 RNU6-1062P-201ENST00000383908 107 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 SNORD67-201ENST00000390833 111 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 Y_RNA.623-201ENST00000411128 95 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AL627311.1-201ENST00000431514 115 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 MYL8P-204ENST00000431574 518 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 RPS29P26-201ENST00000477483 171 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC109479.2-201ENST00000517842 174 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC093732.2-201ENST00000607950 274 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AL360181.4-201ENST00000621752 134 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 AC116096.1-201ENST00000566804 2314 ntBASIC4.19□□□□□ -1.74
USHBP1Q8N6Y0 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 Z75746.1-201ENST00000440243 2080 ntBASIC4.18□□□□□ -1.74
USHBP1Q8N6Y0 SNORA5B-201ENST00000363786 132 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms