Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 RPS29P15-201ENST00000458329 171 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC012493.3-201ENST00000604494 112 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.15-201ENST00000611544 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.16-201ENST00000613119 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.12-201ENST00000613778 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.20-201ENST00000613956 192 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.9-201ENST00000615427 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.11-201ENST00000616345 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.2-201ENST00000616535 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.3-201ENST00000617785 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.19-201ENST00000618602 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 RNU2-1-201ENST00000618664 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.6-201ENST00000619225 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.5-201ENST00000619465 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 U2.10-201ENST00000620268 191 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 YWHAEP7-203ENST00000622054 312 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 SEPT14P19-203ENST00000633205 211 ntBASIC2.11□□□□□ -2.07
CCDC40Q4G0X9 AC008555.8-201ENST00000623602 2168 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 RNU6-1029P-201ENST00000384109 107 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 MIR676-201ENST00000390702 67 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 BTF3L4P1-201ENST00000413813 468 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AL669831.1-202ENST00000428504 417 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC133104.1-201ENST00000429100 218 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AL596276.1-201ENST00000434465 418 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 GTF2IP13-201ENST00000438487 386 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC244505.5-201ENST00000443639 207 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC079448.1-201ENST00000449377 373 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 RPS27AP8-201ENST00000452665 445 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 HMGB1P35-201ENST00000503360 598 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 RNU6-1178P-201ENST00000516674 107 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 RNA5SP503-201ENST00000517047 117 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 RNU6-667P-201ENST00000517186 102 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AP003392.2-201ENST00000527269 208 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AL159153.1-201ENST00000619688 317 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC007792.1-201ENST00000623023 402 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC091932.3-201ENST00000624223 323 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 Z69720.2-201ENST00000624755 279 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 AC002543.1-201ENST00000299783 1954 ntBASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.1□□□□□ -2.07
CCDC40Q4G0X9 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 RNU6-181P-201ENST00000363225 107 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 RNU6-456P-201ENST00000384493 107 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 SNORA11.2-201ENST00000408318 127 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 RNU2-48P-201ENST00000410694 191 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 PIGFP2-201ENST00000421400 651 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AL031667.1-201ENST00000440222 725 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AC007969.2-201ENST00000441891 191 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 RPL23AP3-201ENST00000453844 468 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AL353752.1-201ENST00000454946 260 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 RPL38P4-201ENST00000502376 214 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 MRPS17P9-201ENST00000511924 393 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 RNU6-445P-201ENST00000516949 107 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AP000763.2-201ENST00000540641 163 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 MIR3913-1-201ENST00000577744 102 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AL109918.3-201ENST00000603072 338 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 AL670379.2-201ENST00000604983 252 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 Z82243.1-201ENST00000609432 473 ntBASIC2.09□□□□□ -2.07
CCDC40Q4G0X9 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
CCDC40Q4G0X9 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 RNU6-1303P-201ENST00000364841 107 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 RNU4-48P-201ENST00000365559 182 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 RNA5SP489-201ENST00000410986 109 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 RNU2-32P-201ENST00000411193 191 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AL353689.1-201ENST00000438895 199 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 CYCSP27-201ENST00000527643 293 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AC026271.5-201ENST00000577873 130 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 SNRPGP17-201ENST00000603780 214 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AC005034.5-201ENST00000604219 466 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AC008945.2-201ENST00000606056 604 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AC097372.5-201ENST00000623665 376 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms