Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-512P-201ENST00000364438 103 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-611P-201ENST00000384276 104 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AL603865.2-201ENST00000401679 213 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1□□□□□ -2.25
CCDC88AQ3V6T2 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AC007327.1-201ENST00000447461 264 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 RPL9P9-202ENST00000466501 579 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AP001025.1-201ENST00000486139 332 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AC139453.3-201ENST00000493276 369 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 SNORA31.19-201ENST00000517079 126 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AF038458.1-201ENST00000588406 262 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AL592221.1-201ENST00000605266 382 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AC006270.3-201ENST00000605967 1036 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 AC017037.3-201ENST00000625016 472 ntBASIC1□□□□□ -2.25
CCDC88AQ3V6T2 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC1□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-858P-201ENST00000362436 107 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 RNU5E-6P-201ENST00000365574 115 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 SNORD116-20-201ENST00000384529 92 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 MIR320C1-201ENST00000408566 88 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 BTF3L4P1-201ENST00000413813 468 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AL353621.1-201ENST00000418219 243 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC104563.1-201ENST00000476147 376 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC116655.1-201ENST00000508324 901 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 Y_RNA.681-201ENST00000516445 113 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 MTND3P13-201ENST00000574391 343 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 MIR1273C-201ENST00000578669 77 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC243960.4-201ENST00000600532 288 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AP001981.2-201ENST00000603241 418 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-1192P-201ENST00000612197 107 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 uc_338.15-201ENST00000615470 191 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-489P-201ENST00000618289 107 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC112204.3-201ENST00000623822 332 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-1010P-201ENST00000362757 107 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 SNORD116-12-201ENST00000384468 92 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC138623.1-201ENST00000418060 216 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AL161651.1-201ENST00000440882 223 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 MTND1P3-201ENST00000484956 952 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 RPL39P36-201ENST00000490784 156 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC093259.1-201ENST00000509755 300 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 TPT1P8-201ENST00000510120 555 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-390P-201ENST00000516259 103 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AC068587.4-201ENST00000533893 186 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 RPL30P11-203ENST00000598995 310 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 AL512427.1-201ENST00000618593 349 ntBASIC0.99□□□□□ -2.25
CCDC88AQ3V6T2 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 RBBP8P1-201ENST00000449447 1844 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 AC092125.1-201ENST00000562568 1995 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 SNORD114-6-201ENST00000364393 72 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 SNORA25B-201ENST00000365507 128 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 SNORA70.7-201ENST00000384159 133 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 MIR30A-201ENST00000385092 71 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 MTCO2P1-201ENST00000424648 477 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 RPS15AP10-201ENST00000432472 382 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 PTENP1-201ENST00000447117 1215 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 MTND2P33-201ENST00000506452 1031 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 RNU6-586P-201ENST00000517265 104 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 AC087894.1-201ENST00000538359 518 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 AC093012.1-202ENST00000549403 582 ntBASIC0.98□□□□□ -2.25
CCDC88AQ3V6T2 RNA5SP193-201ENST00000410353 107 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 C1DP1-201ENST00000426049 402 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 NDUFB1P2-201ENST00000449477 176 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC092001.1-201ENST00000453012 261 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC005908.1-201ENST00000468701 347 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 RPL30P6-201ENST00000475925 342 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 MTCYBP40-201ENST00000509390 1135 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 SNORA31.17-201ENST00000516953 127 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC036111.3-201ENST00000526389 112 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC233702.2-202ENST00000562547 291 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 CLIC4P2-201ENST00000601934 717 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC021171.1-201ENST00000603137 706 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC009229.3-201ENST00000608056 282 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 MIR8087-201ENST00000612745 78 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 CBX3P9-201ENST00000402326 552 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 RNU4-22P-201ENST00000411058 166 ntBASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.97□□□□□ -2.25
CCDC88AQ3V6T2 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms