Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
PTPN9P43378 Y_RNA.339-201ENST00000365325 102 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RPL21P75-201ENST00000396599 483 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RPL21P28-201ENST00000401418 483 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 FTH1P15-201ENST00000406984 280 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RNU2-49P-201ENST00000410666 184 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 ATG3P1-201ENST00000419507 911 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.89□□□□□ -1.95
PTPN9P43378 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.89□□□□□ -1.95
PTPN9P43378 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.89□□□□□ -1.95
PTPN9P43378 RPL21P39-201ENST00000463605 483 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 AC087190.1-201ENST00000484462 480 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 AC093591.1-201ENST00000491435 481 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RPS27P26-201ENST00000494583 239 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RPL21P16-201ENST00000495531 483 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RNU6-377P-201ENST00000515965 102 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RNU6-581P-201ENST00000516214 105 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 AC105029.1-201ENST00000520250 669 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 AP005639.2-201ENST00000527592 928 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.89□□□□□ -1.95
PTPN9P43378 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.89□□□□□ -1.95
PTPN9P43378 AC009163.5-201ENST00000575421 637 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.89□□□□□ -1.95
PTPN9P43378 AC009314.1-201ENST00000603871 304 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 ELOCP5-201ENST00000604924 333 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RPL23AP88-201ENST00000605759 454 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 RNU6-91P-201ENST00000607774 107 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 AC005046.1-201ENST00000608515 625 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 Y_RNA.804-201ENST00000615262 101 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 MIR3529-201ENST00000637713 78 ntBASIC2.89□□□□□ -1.95
PTPN9P43378 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.89□□□□□ -1.95
PTPN9P43378 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
PTPN9P43378 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PTPN9P43378 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.88□□□□□ -1.95
PTPN9P43378 RNU6-525P-201ENST00000363685 104 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 Y_RNA.184-201ENST00000363884 108 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PTPN9P43378 RNU6-19P-201ENST00000384718 107 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 SNORD73A-201ENST00000386062 65 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 AL445529.1-201ENST00000398713 389 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 SNORD88.1-201ENST00000408684 91 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 RNU6-293P-201ENST00000411259 106 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 AC074085.1-201ENST00000413598 418 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.88□□□□□ -1.95
PTPN9P43378 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.88□□□□□ -1.95
PTPN9P43378 SAR1AP4-201ENST00000429225 591 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.88□□□□□ -1.95
PTPN9P43378 SNRPEP8-201ENST00000442866 260 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.88□□□□□ -1.95
PTPN9P43378 AC130509.1-201ENST00000464158 433 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 MED28P2-201ENST00000475771 317 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 MTND5P5-201ENST00000503764 376 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 MTND3P22-201ENST00000510932 243 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 RPL39P5-202ENST00000512505 151 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 Y_RNA.682-201ENST00000516457 100 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.88□□□□□ -1.95
PTPN9P43378 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.88□□□□□ -1.95
PTPN9P43378 AC243960.4-201ENST00000600532 288 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.88□□□□□ -1.95
PTPN9P43378 AC064836.2-201ENST00000609491 462 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 AC107871.2-201ENST00000612894 502 ntBASIC2.88□□□□□ -1.95
PTPN9P43378 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PTPN9P43378 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PTPN9P43378 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PTPN9P43378 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.87□□□□□ -1.95
PTPN9P43378 RNU6-105P-201ENST00000363909 104 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 RNU6-593P-201ENST00000364716 112 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 RNU6-843P-201ENST00000384454 104 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 RNU6-95P-201ENST00000384697 107 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AL138827.1-201ENST00000402666 306 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 RN7SKP158-201ENST00000410453 326 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 RNA5SP492-201ENST00000411330 114 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 RPL19P1-201ENST00000411635 428 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AL358075.3-201ENST00000426289 226 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.87□□□□□ -1.95
PTPN9P43378 AC107083.1-201ENST00000439643 279 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AC124916.1-201ENST00000444020 547 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 OSTCP8-201ENST00000445117 448 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AL031274.1-201ENST00000450334 232 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AC107399.1-201ENST00000451226 265 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AC133134.1-201ENST00000466800 359 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AC010186.2-204ENST00000537668 439 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PTPN9P43378 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.87□□□□□ -1.95
PTPN9P43378 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.87□□□□□ -1.95
PTPN9P43378 MIR4790-201ENST00000577799 79 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 BNIP3P16-201ENST00000589779 534 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AL117336.2-201ENST00000602435 335 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AL670379.10-201ENST00000604330 253 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AL670379.9-201ENST00000605428 253 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.87□□□□□ -1.95
PTPN9P43378 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.87□□□□□ -1.95
PTPN9P43378 AL132765.2-201ENST00000610812 351 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PTPN9P43378 AC011890.2-201ENST00000613393 294 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.87□□□□□ -1.95
PTPN9P43378 AC104985.2-201ENST00000620598 500 ntBASIC2.87□□□□□ -1.95
PTPN9P43378 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms