Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZNF519P1-201ENST00000449011 1626 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC110491.1-201ENST00000562191 2010 ntBASIC2.6□□□□□ -1.99
MSH3P20585 Y_RNA.263-201ENST00000364659 114 ntBASIC2.6□□□□□ -1.99
MSH3P20585 RNU6-72P-201ENST00000384285 79 ntBASIC2.6□□□□□ -1.99
MSH3P20585 MIR767-201ENST00000390228 109 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AL356432.1-201ENST00000405809 419 ntBASIC2.6□□□□□ -1.99
MSH3P20585 RAP1BP3-201ENST00000407180 549 ntBASIC2.6□□□□□ -1.99
MSH3P20585 RNU2-41P-201ENST00000410991 178 ntBASIC2.6□□□□□ -1.99
MSH3P20585 RNA5SP184-201ENST00000411071 108 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC023141.4-201ENST00000412031 328 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.6□□□□□ -1.99
MSH3P20585 RPL32P28-201ENST00000443577 397 ntBASIC2.6□□□□□ -1.99
MSH3P20585 MTND1P11-201ENST00000456661 876 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AMD1P1-201ENST00000457220 922 ntBASIC2.6□□□□□ -1.99
MSH3P20585 PPP1R2P5-201ENST00000457256 603 ntBASIC2.6□□□□□ -1.99
MSH3P20585 snoU109.2-201ENST00000459316 135 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC128713.1-201ENST00000471495 306 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC103851.1-201ENST00000506833 274 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.6□□□□□ -1.99
MSH3P20585 RNU6-1088P-201ENST00000516850 104 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC021739.1-201ENST00000559631 174 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC023043.2-201ENST00000589678 1026 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC010620.2-201ENST00000600135 313 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AL670379.10-201ENST00000604330 253 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AL670379.9-201ENST00000605428 253 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC123912.5-201ENST00000605470 343 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.6□□□□□ -1.99
MSH3P20585 AC092608.2-201ENST00000624427 218 ntBASIC2.6□□□□□ -1.99
MSH3P20585 AL133216.2-202ENST00000634512 349 ntBASIC2.6□□□□□ -1.99
MSH3P20585 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.6□□□□□ -1.99
MSH3P20585 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
MSH3P20585 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
MSH3P20585 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
MSH3P20585 AC062016.1-201ENST00000355719 319 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-37P-201ENST00000362692 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 Y_RNA.135-201ENST00000363439 95 ntBASIC2.59□□□□□ -1.99
MSH3P20585 Y_RNA.184-201ENST00000363884 108 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-11P-201ENST00000364234 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-898P-201ENST00000365627 104 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-25P-201ENST00000383873 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-1-201ENST00000383898 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-128P-201ENST00000383976 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-48P-201ENST00000384161 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-36P-201ENST00000384172 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-4P-201ENST00000384205 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-5P-201ENST00000384238 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-3P-201ENST00000384314 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-16P-201ENST00000384385 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-15P-201ENST00000384534 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-2-201ENST00000384627 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-29P-201ENST00000384637 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-9-201ENST00000384776 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-33P-201ENST00000384793 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 MIR23A-201ENST00000385245 73 ntBASIC2.59□□□□□ -1.99
MSH3P20585 AL513477.1-202ENST00000417061 214 ntBASIC2.59□□□□□ -1.99
MSH3P20585 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.59□□□□□ -1.99
MSH3P20585 AL365400.1-201ENST00000431854 640 ntBASIC2.59□□□□□ -1.99
MSH3P20585 AL359672.1-201ENST00000442302 409 ntBASIC2.59□□□□□ -1.99
MSH3P20585 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.59□□□□□ -1.99
MSH3P20585 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.59□□□□□ -1.99
MSH3P20585 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.59□□□□□ -1.99
MSH3P20585 Y_RNA.687-201ENST00000516558 91 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-1332P-201ENST00000516666 104 ntBASIC2.59□□□□□ -1.99
MSH3P20585 AP005597.4-201ENST00000526762 229 ntBASIC2.59□□□□□ -1.99
MSH3P20585 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.59□□□□□ -1.99
MSH3P20585 RPL12P50-201ENST00000603116 116 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RNU6-6P-201ENST00000606623 107 ntBASIC2.59□□□□□ -1.99
MSH3P20585 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.59□□□□□ -1.99
MSH3P20585 uc_338.5-201ENST00000611839 155 ntBASIC2.59□□□□□ -1.99
MSH3P20585 Y_RNA.804-201ENST00000615262 101 ntBASIC2.59□□□□□ -1.99
MSH3P20585 RMST_7.1-201ENST00000621935 268 ntBASIC2.59□□□□□ -1.99
MSH3P20585 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
MSH3P20585 AC026241.1-201ENST00000517873 2142 ntBASIC2.59□□□□□ -2
MSH3P20585 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
MSH3P20585 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.58□□□□□ -2
MSH3P20585 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 SNORD62.1-201ENST00000362541 86 ntBASIC2.58□□□□□ -2
MSH3P20585 RNU6-1180P-201ENST00000364935 107 ntBASIC2.58□□□□□ -2
MSH3P20585 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 MIR634-201ENST00000385208 97 ntBASIC2.58□□□□□ -2
MSH3P20585 U3.37-201ENST00000408528 213 ntBASIC2.58□□□□□ -2
MSH3P20585 SNORD56-201ENST00000413522 71 ntBASIC2.58□□□□□ -2
MSH3P20585 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.58□□□□□ -2
MSH3P20585 NUP35P1-201ENST00000422734 947 ntBASIC2.58□□□□□ -2
MSH3P20585 HMGB1P18-201ENST00000438801 619 ntBASIC2.58□□□□□ -2
MSH3P20585 AC011816.1-201ENST00000441346 546 ntBASIC2.58□□□□□ -2
MSH3P20585 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.58□□□□□ -2
MSH3P20585 AC093019.1-201ENST00000443135 252 ntBASIC2.58□□□□□ -2
MSH3P20585 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.58□□□□□ -2
MSH3P20585 BTF3P15-201ENST00000455606 336 ntBASIC2.58□□□□□ -2
MSH3P20585 RPL23AP45-201ENST00000476406 468 ntBASIC2.58□□□□□ -2
MSH3P20585 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.58□□□□□ -2
MSH3P20585 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.58□□□□□ -2
MSH3P20585 Y_RNA.691-201ENST00000516611 103 ntBASIC2.58□□□□□ -2
MSH3P20585 RNU6-566P-201ENST00000516790 107 ntBASIC2.58□□□□□ -2
MSH3P20585 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 AC105029.1-201ENST00000520250 669 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms