Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SNORA27.3-201ENST00000364937 134 ntBASIC0.28□□□□□ -2.36
TNFP01375 MIR520A-201ENST00000384862 85 ntBASIC0.28□□□□□ -2.36
TNFP01375 MIR186-201ENST00000384988 86 ntBASIC0.28□□□□□ -2.36
TNFP01375 AL031577.2-201ENST00000404133 280 ntBASIC0.28□□□□□ -2.36
TNFP01375 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.28□□□□□ -2.36
TNFP01375 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC0.28□□□□□ -2.36
TNFP01375 MTCO3P1-205ENST00000422088 832 ntBASIC0.28□□□□□ -2.36
TNFP01375 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.28□□□□□ -2.36
TNFP01375 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC0.28□□□□□ -2.36
TNFP01375 RPL37P6-201ENST00000460682 294 ntBASIC0.28□□□□□ -2.36
TNFP01375 AC023194.1-201ENST00000493084 308 ntBASIC0.28□□□□□ -2.36
TNFP01375 RNU5A-4P-201ENST00000516588 111 ntBASIC0.28□□□□□ -2.36
TNFP01375 AC091489.2-201ENST00000566263 604 ntBASIC0.28□□□□□ -2.36
TNFP01375 AC022432.1-201ENST00000595739 310 ntBASIC0.28□□□□□ -2.36
TNFP01375 AC120349.3-201ENST00000624377 529 ntBASIC0.28□□□□□ -2.36
TNFP01375 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.27□□□□□ -2.37
TNFP01375 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.27□□□□□ -2.37
TNFP01375 TAF13P2-201ENST00000416876 286 ntBASIC0.27□□□□□ -2.37
TNFP01375 AC063976.4-201ENST00000421971 163 ntBASIC0.27□□□□□ -2.37
TNFP01375 AL358176.2-201ENST00000425769 204 ntBASIC0.27□□□□□ -2.37
TNFP01375 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC0.27□□□□□ -2.37
TNFP01375 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.27□□□□□ -2.37
TNFP01375 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.27□□□□□ -2.37
TNFP01375 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC0.27□□□□□ -2.37
TNFP01375 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.27□□□□□ -2.37
TNFP01375 SNORA3.4-201ENST00000515969 96 ntBASIC0.27□□□□□ -2.37
TNFP01375 AC087897.1-201ENST00000550134 156 ntBASIC0.27□□□□□ -2.37
TNFP01375 AL161798.1-201ENST00000604630 131 ntBASIC0.27□□□□□ -2.37
TNFP01375 MIR8087-201ENST00000612745 78 ntBASIC0.27□□□□□ -2.37
TNFP01375 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.27□□□□□ -2.37
TNFP01375 AC106858.1-201ENST00000637497 429 ntBASIC0.27□□□□□ -2.37
TNFP01375 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
TNFP01375 RNU6-222P-201ENST00000362438 107 ntBASIC0.26□□□□□ -2.37
TNFP01375 MIR200A-201ENST00000384875 90 ntBASIC0.26□□□□□ -2.37
TNFP01375 DHFRP6-201ENST00000401776 268 ntBASIC0.26□□□□□ -2.37
TNFP01375 ERHP2-201ENST00000402323 299 ntBASIC0.26□□□□□ -2.37
TNFP01375 AL133264.1-201ENST00000407157 562 ntBASIC0.26□□□□□ -2.37
TNFP01375 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.26□□□□□ -2.37
TNFP01375 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.26□□□□□ -2.37
TNFP01375 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.26□□□□□ -2.37
TNFP01375 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC0.26□□□□□ -2.37
TNFP01375 OFD1P3Y-201ENST00000453312 783 ntBASIC0.26□□□□□ -2.37
TNFP01375 AK3P2-201ENST00000507976 429 ntBASIC0.26□□□□□ -2.37
TNFP01375 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.26□□□□□ -2.37
TNFP01375 AC018630.3-201ENST00000542637 96 ntBASIC0.26□□□□□ -2.37
TNFP01375 AC018659.1-201ENST00000551083 169 ntBASIC0.26□□□□□ -2.37
TNFP01375 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
TNFP01375 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.26□□□□□ -2.37
TNFP01375 AC093788.1-201ENST00000609356 927 ntBASIC0.26□□□□□ -2.37
TNFP01375 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.26□□□□□ -2.37
TNFP01375 AC107905.1-201ENST00000616204 426 ntBASIC0.26□□□□□ -2.37
TNFP01375 AL158163.2-201ENST00000619110 700 ntBASIC0.26□□□□□ -2.37
TNFP01375 AC023934.1-201ENST00000574529 2389 ntBASIC0.26□□□□□ -2.37
TNFP01375 Y_RNA.124-201ENST00000363339 93 ntBASIC0.25□□□□□ -2.37
TNFP01375 RNA5SP325-201ENST00000363756 130 ntBASIC0.25□□□□□ -2.37
TNFP01375 RNU6-40P-201ENST00000384254 107 ntBASIC0.25□□□□□ -2.37
TNFP01375 AL356776.1-201ENST00000406574 447 ntBASIC0.25□□□□□ -2.37
TNFP01375 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.25□□□□□ -2.37
TNFP01375 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.25□□□□□ -2.37
TNFP01375 USP9YP22-201ENST00000438971 294 ntBASIC0.25□□□□□ -2.37
TNFP01375 MTCO2P25-201ENST00000447065 681 ntBASIC0.25□□□□□ -2.37
TNFP01375 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.25□□□□□ -2.37
TNFP01375 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.25□□□□□ -2.37
TNFP01375 RPL30P6-201ENST00000475925 342 ntBASIC0.25□□□□□ -2.37
TNFP01375 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC0.25□□□□□ -2.37
TNFP01375 SNORA62.5-201ENST00000516634 120 ntBASIC0.25□□□□□ -2.37
TNFP01375 RN7SKP256-201ENST00000517201 314 ntBASIC0.25□□□□□ -2.37
TNFP01375 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.25□□□□□ -2.37
TNFP01375 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.25□□□□□ -2.37
TNFP01375 MIR4514-201ENST00000581410 57 ntBASIC0.25□□□□□ -2.37
TNFP01375 AC107304.1-201ENST00000604229 296 ntBASIC0.25□□□□□ -2.37
TNFP01375 BNIP3P31-201ENST00000604515 566 ntBASIC0.25□□□□□ -2.37
TNFP01375 AC130324.3-201ENST00000614165 542 ntBASIC0.25□□□□□ -2.37
TNFP01375 AC093648.1-201ENST00000623546 606 ntBASIC0.25□□□□□ -2.37
TNFP01375 MIR6516-201ENST00000630554 81 ntBASIC0.25□□□□□ -2.37
TNFP01375 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
TNFP01375 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.24□□□□□ -2.37
TNFP01375 RNU6-288P-201ENST00000363690 104 ntBASIC0.24□□□□□ -2.37
TNFP01375 RNU1-96P-201ENST00000364163 162 ntBASIC0.24□□□□□ -2.37
TNFP01375 SNORD114-6-201ENST00000364393 72 ntBASIC0.24□□□□□ -2.37
TNFP01375 RNU6-1005P-201ENST00000384519 107 ntBASIC0.24□□□□□ -2.37
TNFP01375 MTCO1P56-201ENST00000401674 224 ntBASIC0.24□□□□□ -2.37
TNFP01375 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC0.24□□□□□ -2.37
TNFP01375 AL358794.1-201ENST00000445689 381 ntBASIC0.24□□□□□ -2.37
TNFP01375 RAD1P2-201ENST00000446414 663 ntBASIC0.24□□□□□ -2.37
TNFP01375 RPS27AP8-201ENST00000452665 445 ntBASIC0.24□□□□□ -2.37
TNFP01375 FABP5P15-201ENST00000453566 214 ntBASIC0.24□□□□□ -2.37
TNFP01375 AC002350.1-201ENST00000490759 375 ntBASIC0.24□□□□□ -2.37
TNFP01375 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.24□□□□□ -2.37
TNFP01375 AP001893.2-201ENST00000526949 202 ntBASIC0.24□□□□□ -2.37
TNFP01375 AL356057.1-201ENST00000533798 831 ntBASIC0.24□□□□□ -2.37
TNFP01375 AF038458.1-201ENST00000588406 262 ntBASIC0.24□□□□□ -2.37
TNFP01375 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
TNFP01375 AC019226.1-201ENST00000625666 515 ntBASIC0.24□□□□□ -2.37
TNFP01375 AL391994.1-201ENST00000254724 282 ntBASIC0.23□□□□□ -2.37
TNFP01375 RNU6-1010P-201ENST00000362757 107 ntBASIC0.23□□□□□ -2.37
TNFP01375 U3.9-201ENST00000363823 204 ntBASIC0.23□□□□□ -2.37
TNFP01375 Y_RNA.258-201ENST00000364613 105 ntBASIC0.23□□□□□ -2.37
TNFP01375 RNU6-945P-201ENST00000383947 107 ntBASIC0.23□□□□□ -2.37
TNFP01375 MIR942-201ENST00000401111 86 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms