Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 NUP35P1-201ENST00000422734 947 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 MTND3P9-201ENST00000429526 346 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 DAP3P1-201ENST00000441522 278 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 AC091179.1-201ENST00000461606 579 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 AP005902.1-201ENST00000521358 186 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 AP001836.1-201ENST00000604675 523 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 RNU6-227P-201ENST00000362865 103 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 Y_RNA.263-201ENST00000364659 114 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 RN7SKP111-201ENST00000410349 271 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 RNU2-23P-201ENST00000410545 195 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 AP000275.1-201ENST00000411943 390 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 RNU6-1231P-201ENST00000517185 103 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 AC109329.1-201ENST00000518744 317 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 AC103810.1-201ENST00000579873 453 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 AC099654.5-201ENST00000636479 350 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 AC073073.2-201ENST00000609827 2578 ntBASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC9Q9Y3X0 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 OR56A5-201ENST00000340110 738 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 RNU6-306P-201ENST00000384617 107 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 RN7SKP158-201ENST00000410453 326 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 Y_RNA.635-201ENST00000459041 101 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 RN7SL863P-201ENST00000462370 296 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 MIR3199-1-201ENST00000582434 88 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 POLR3GP2-201ENST00000588366 668 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 AL356157.2-201ENST00000605122 111 ntBASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
CCDC9Q9Y3X0 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC009487.2-201ENST00000420969 6821 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 RNU1-18P-201ENST00000363062 164 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 Y_RNA.356-201ENST00000365475 113 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 MIR1261-201ENST00000408659 82 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 BX276092.3-201ENST00000424182 230 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 RPS29P31-201ENST00000446147 164 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC116337.1-201ENST00000509680 687 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 ACA59.1-201ENST00000515966 143 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC026241.1-201ENST00000517873 2142 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 CPDP1-201ENST00000579660 283 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AC018692.3-201ENST00000623929 123 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 AL732372.2-225ENST00000642124 456 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 FAM35CP-201ENST00000554755 2470 ntBASIC4.47□□□□□ -1.69
CCDC9Q9Y3X0 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-593P-201ENST00000364716 112 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 Y_RNA.339-201ENST00000365325 102 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 RNU1-57P-201ENST00000384491 166 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 Z82205.1-201ENST00000428456 297 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 MICF-203ENST00000432679 129 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 RPS15AP7-201ENST00000439294 405 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-579P-201ENST00000516879 102 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 SCARNA3-201ENST00000517097 143 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 MIR3976-201ENST00000606807 139 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 MIR8076-201ENST00000611401 83 ntBASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CCDC9Q9Y3X0 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-1141P-201ENST00000364520 107 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-43P-201ENST00000384302 107 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 MIR218-1-201ENST00000384999 110 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 MT-TD-201ENST00000387419 68 ntBASIC4.45□□□□□ -1.7
CCDC9Q9Y3X0 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms