Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC073415.1-201ENST00000449240 153 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 CACYBPP2-201ENST00000453625 678 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 SNRPGP7-201ENST00000469016 106 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RN7SKP256-201ENST00000517201 314 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC090136.1-201ENST00000520009 240 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC034114.1-201ENST00000520293 285 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC115990.1-201ENST00000526957 301 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC022880.1-201ENST00000534017 973 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AP000763.2-201ENST00000540641 163 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 MTCO3P23-201ENST00000561363 289 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC026271.5-201ENST00000577873 130 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AL031274.2-201ENST00000599419 203 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AL356575.1-201ENST00000603008 283 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 RNU6-428P-201ENST00000362942 107 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 SNORA5B-201ENST00000363786 132 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 RNU1-112P-201ENST00000364401 164 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 Y_RNA.255-201ENST00000364581 97 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AL360182.1-201ENST00000397433 468 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AC063976.3-201ENST00000426849 329 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AL606489.2-201ENST00000433886 234 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 RPS12P2-201ENST00000439728 269 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 Z83846.1-201ENST00000446798 265 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 RNU7-180P-201ENST00000459240 63 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 RNU6-667P-201ENST00000517186 102 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AP003034.1-201ENST00000534621 422 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AC079600.2-201ENST00000550076 130 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 MYL12BP1-201ENST00000569826 507 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 APOOP1-201ENST00000604695 592 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AC245008.1-201ENST00000608123 476 ntBASIC2.1□□□□□ -2.07
FOXA2Q9Y261 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.1□□□□□ -2.07
FOXA2Q9Y261 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 MIR6073-201ENST00000352083 89 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 SNORA25.6-201ENST00000364121 118 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 RNU6-336P-201ENST00000364891 107 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 RNU6-546P-201ENST00000383991 107 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 VN1R108P-201ENST00000431580 830 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AL353752.1-201ENST00000454946 260 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 SNORD109B-201ENST00000458961 67 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 SNORD109A-201ENST00000459128 67 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AC107032.1-201ENST00000485945 480 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AC018868.1-201ENST00000491307 315 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AK3P2-201ENST00000507976 429 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AC096725.1-201ENST00000514266 313 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 MIR6895-201ENST00000613497 78 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AC022202.1-201ENST00000613515 211 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AL158209.2-201ENST00000619266 216 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 AC073534.2-201ENST00000620377 381 ntBASIC2.09□□□□□ -2.07
FOXA2Q9Y261 MTND5P26-201ENST00000426018 1752 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 ARL5AP4-201ENST00000430731 512 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AL121601.2-201ENST00000438019 707 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC243964.1-201ENST00000441814 261 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 MTCO2P18-201ENST00000457151 658 ntBASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA2Q9Y261 RNA5SP356-201ENST00000515972 94 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms