Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 RNU6-667P-201ENST00000517186 102 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AC135279.1-201ENST00000543493 504 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 MIR5089-201ENST00000580047 84 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AL121992.2-201ENST00000606262 256 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AL451064.1-201ENST00000607718 471 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AC093788.1-201ENST00000609356 927 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AC108479.2-201ENST00000617314 601 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AL603839.4-201ENST00000624658 1005 ntBASIC1.94□□□□□ -2.1
TM9SF3Q9HD45 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RNU6-1010P-201ENST00000362757 107 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RNU6-641P-201ENST00000384006 107 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RNU6-297P-201ENST00000384636 107 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 SNORA40.3-201ENST00000390964 122 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 CISD1P1-201ENST00000393907 327 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RPL23AP32-201ENST00000395315 459 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RPS3AP3-201ENST00000411933 242 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 ISCA1P6-201ENST00000427740 390 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 CALM2P2-201ENST00000428512 440 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 USP9YP8-201ENST00000441913 500 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RPS27AP8-201ENST00000452665 445 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 MTCYBP1-201ENST00000454315 1119 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 SNRPGP9-201ENST00000456025 225 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 MED28P2-201ENST00000475771 317 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RN7SL274P-201ENST00000492268 272 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AC108078.2-201ENST00000510750 236 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RNU2-53P-201ENST00000516257 147 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 Y_RNA.676-201ENST00000516393 96 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 SCARNA24.1-201ENST00000516465 137 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AC011979.2-201ENST00000527568 352 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 IMMP1LP2-201ENST00000552954 492 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 BNIP3P25-201ENST00000596023 559 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 BNIP3P8-201ENST00000597863 560 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 SNRPGP19-201ENST00000603826 189 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AC012360.2-201ENST00000609349 391 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AL133173.2-201ENST00000614270 90 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 uc_338.15-201ENST00000615470 191 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 AL603755.1-201ENST00000619504 163 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.93□□□□□ -2.1
TM9SF3Q9HD45 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 Y_RNA.338-201ENST00000365320 114 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 SNORA24.1-201ENST00000384401 135 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 SNORA8-201ENST00000384574 139 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 RNA5SP465-201ENST00000391195 109 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AL583843.1-201ENST00000456070 346 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 MTAPP1-201ENST00000489154 819 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 CLIC4P2-201ENST00000601934 717 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AL670379.2-201ENST00000604983 252 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AL670379.4-201ENST00000605279 254 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AC098614.4-201ENST00000607601 462 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AC024940.5-201ENST00000622889 474 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 AC019226.2-201ENST00000625973 424 ntBASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TM9SF3Q9HD45 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 RBBP8P1-201ENST00000449447 1844 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 U3.4-201ENST00000363352 213 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 RNU6-169P-201ENST00000365336 107 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 SNORA20.2-201ENST00000383922 131 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 HMGN1P14-201ENST00000412459 517 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AL031779.1-201ENST00000415663 330 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC016831.2-201ENST00000417179 352 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 RPL31P35-201ENST00000431058 377 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 RPS24P1-201ENST00000438550 371 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 GAPDHP17-201ENST00000449858 1001 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 snoU109.2-201ENST00000459316 135 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC104564.1-201ENST00000493028 407 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 MTND1P22-201ENST00000510572 951 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AP000763.2-201ENST00000540641 163 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 NIFKP6-201ENST00000598115 845 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC012493.3-201ENST00000604494 112 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC016727.1-205ENST00000605437 569 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC012409.4-201ENST00000612923 249 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 AC090517.3-201ENST00000625170 141 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 HAUS6P2-201ENST00000433254 2404 ntBASIC1.91□□□□□ -2.1
TM9SF3Q9HD45 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.9□□□□□ -2.1
TM9SF3Q9HD45 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms