Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 GZMAP1-201ENST00000503054 631 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 PRDX4P1-201ENST00000507189 574 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 MTCYBP40-201ENST00000509390 1135 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC113155.1-201ENST00000511141 769 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 RNU6-1332P-201ENST00000516666 104 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC026241.1-201ENST00000517873 2142 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AP004607.1-201ENST00000524456 203 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC103996.1-201ENST00000555468 102 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 AP001094.1-201ENST00000579805 193 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 MIR3672-201ENST00000584290 82 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 OR1M4P-201ENST00000589199 287 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AL670379.10-201ENST00000604330 253 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AL670379.9-201ENST00000605428 253 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC021646.1-201ENST00000605469 484 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC064836.2-201ENST00000609491 462 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
NKX3-1Q99801 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 DUXAP9-208ENST00000622815 614 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 U4.7-201ENST00000638126 106 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 AC099654.14-201ENST00000638599 341 ntBASIC2.37□□□□□ -2.03
NKX3-1Q99801 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
NKX3-1Q99801 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.37□□□□□ -2.03
NKX3-1Q99801 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 MIR26A1-201ENST00000362205 77 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 RNU5E-7P-201ENST00000365290 117 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 RNU6-827P-201ENST00000365553 106 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 FGF7P8-201ENST00000402994 292 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 RPL19P1-201ENST00000411635 428 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 HMGN2P35-201ENST00000412164 270 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 AL513477.1-202ENST00000417061 214 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 AL358075.3-201ENST00000426289 226 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 NDUFA5P4-201ENST00000436704 385 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 AL031274.1-201ENST00000450334 232 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 RNU7-138P-201ENST00000459479 64 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 RPL31P58-201ENST00000469001 379 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC083906.5-201ENST00000503722 328 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC092436.3-201ENST00000511788 257 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC025465.4-201ENST00000513422 638 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 RNU4-49P-201ENST00000516080 140 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 RNU6-273P-201ENST00000516937 96 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 SNORD19.2-201ENST00000516978 73 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 SNORA31.23-201ENST00000517219 133 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC104576.1-201ENST00000524225 88 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC009163.5-201ENST00000575421 637 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
NKX3-1Q99801 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.36□□□□□ -2.03
NKX3-1Q99801 AL121917.1-203ENST00000605534 577 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC009248.2-201ENST00000619826 254 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 AC005858.4-201ENST00000623191 700 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 SCARNA4-202ENST00000625402 129 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 MIR7515-201ENST00000637837 67 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.36□□□□□ -2.03
NKX3-1Q99801 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-1Q99801 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-1Q99801 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
NKX3-1Q99801 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 SNORD56.5-201ENST00000364281 72 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 Y_RNA.414-201ENST00000384011 101 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 Y_RNA.530-201ENST00000384587 101 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC138393.2-201ENST00000414742 246 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 VN1R36P-201ENST00000414936 291 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 NUP35P1-201ENST00000422734 947 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC112220.1-201ENST00000434628 355 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AL513043.1-201ENST00000439124 535 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 AP000705.1-201ENST00000454567 350 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 MED28P2-201ENST00000475771 317 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC090525.1-201ENST00000479116 478 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 AP001025.1-201ENST00000486139 332 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC097462.2-201ENST00000504623 481 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC010486.1-201ENST00000511793 424 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 RPL39P5-202ENST00000512505 151 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 SNORA25.11-201ENST00000515935 105 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC069113.1-201ENST00000517763 267 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC087854.1-201ENST00000519706 414 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 AC004486.1-201ENST00000546846 233 ntBASIC2.35□□□□□ -2.03
NKX3-1Q99801 CR383656.8-201ENST00000549046 145 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 157.6 ms