Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL365338.1-201ENST00000422282 858 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AL365400.1-201ENST00000431854 640 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 OR2AQ1P-201ENST00000451972 200 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC108059.3-201ENST00000456388 214 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 RPL9P9-202ENST00000466501 579 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 RPS23P4-201ENST00000487908 423 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 SNORA3.4-201ENST00000515969 96 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 RNU6-1028P-201ENST00000517164 93 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC019176.1-201ENST00000518519 225 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC080078.3-201ENST00000605407 463 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC112220.2-201ENST00000605513 533 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC006270.3-201ENST00000605967 1036 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 AL365204.3-201ENST00000612448 685 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
CCDC42Q96M95 AC100821.1-201ENST00000523153 2479 ntBASIC0.94□□□□□ -2.26
CCDC42Q96M95 RNU5A-8P-201ENST00000364102 114 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 RNU6-395P-201ENST00000365662 106 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 RNU6-26P-201ENST00000383985 107 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 USP9YP21-201ENST00000420603 432 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 AL591212.2-201ENST00000433923 257 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 KATNBL1P3-201ENST00000443475 909 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 CYP3A52P-201ENST00000563326 91 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 MIR5094-201ENST00000578766 85 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 AC005776.1-201ENST00000603164 290 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 AC007792.1-201ENST00000623023 402 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC42Q96M95 LINC02555-201ENST00000563933 1951 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 AL391516.1-201ENST00000554380 2449 ntBASIC0.93□□□□□ -2.26
CCDC42Q96M95 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC42Q96M95 RNU1-22P-201ENST00000363334 158 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 SNORD114-2-201ENST00000363953 78 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 SNORA75B-201ENST00000384053 137 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 RNU6-72P-201ENST00000384285 79 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 MIR532-201ENST00000385025 91 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 SNORA40.2-201ENST00000390847 128 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 Y_RNA.578-201ENST00000390903 88 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 MRPL35P1-201ENST00000404272 572 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AL357139.1-201ENST00000407792 426 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 MIR320C1-201ENST00000408566 88 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 RN7SKP266-201ENST00000410232 287 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC42Q96M95 RPL21P111-201ENST00000418453 477 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.92□□□□□ -2.26
CCDC42Q96M95 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC42Q96M95 AL583843.1-201ENST00000456070 346 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 SNRPFP4-201ENST00000456366 242 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AC009646.1-201ENST00000510455 318 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.92□□□□□ -2.26
CCDC42Q96M95 CENPUP1-201ENST00000526649 1202 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AC112220.3-201ENST00000605502 502 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AP000654.2-201ENST00000605633 586 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AC022893.3-201ENST00000607665 437 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AC063943.3-201ENST00000615562 356 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AC012676.2-201ENST00000619258 186 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AL159153.1-201ENST00000619688 317 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AL589994.2-201ENST00000621124 579 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 AC120349.3-201ENST00000624377 529 ntBASIC0.92□□□□□ -2.26
CCDC42Q96M95 RNU6-621P-201ENST00000364752 109 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC42Q96M95 SNORA29-201ENST00000384183 140 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 HSPE1P9-201ENST00000440046 311 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 MTND1P16-201ENST00000465177 898 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 COX6CP14-201ENST00000469580 174 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 SUMO2P5-201ENST00000506790 245 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 UBL5P1-201ENST00000507979 193 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 RNU6-351P-201ENST00000516097 100 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC42Q96M95 AC015688.6-201ENST00000577737 104 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 AP003465.2-201ENST00000602571 373 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 AC013244.2-201ENST00000603396 103 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 AC004492.1-201ENST00000607036 742 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 AC092574.1-201ENST00000609771 420 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
CCDC42Q96M95 AC091895.1-201ENST00000624494 256 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 AC095038.3-201ENST00000634439 195 ntBASIC0.91□□□□□ -2.26
CCDC42Q96M95 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC42Q96M95 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.9□□□□□ -2.26
CCDC42Q96M95 MTND5P35-201ENST00000557537 1720 ntBASIC0.9□□□□□ -2.27
CCDC42Q96M95 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
CCDC42Q96M95 RNU1-124P-201ENST00000363861 145 ntBASIC0.9□□□□□ -2.27
CCDC42Q96M95 Y_RNA.332-201ENST00000365271 113 ntBASIC0.9□□□□□ -2.27
CCDC42Q96M95 RNU6-53P-201ENST00000365367 106 ntBASIC0.9□□□□□ -2.27
CCDC42Q96M95 SNORD116-20-201ENST00000384529 92 ntBASIC0.9□□□□□ -2.27
CCDC42Q96M95 RPL23AP32-201ENST00000395315 459 ntBASIC0.9□□□□□ -2.27
CCDC42Q96M95 MIR1305-201ENST00000408300 86 ntBASIC0.9□□□□□ -2.27
CCDC42Q96M95 Y_RNA.623-201ENST00000411128 95 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms