Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC245884.10-201ENST00000597355 337 ntBASIC1.3□□□□□ -2.2
LMX1AQ8TE12 AC008751.2-201ENST00000597885 980 ntBASIC1.3□□□□□ -2.2
LMX1AQ8TE12 AL031281.1-201ENST00000604049 488 ntBASIC1.3□□□□□ -2.2
LMX1AQ8TE12 NDUFA8P1-201ENST00000605525 367 ntBASIC1.3□□□□□ -2.2
LMX1AQ8TE12 AP002360.4-201ENST00000606980 481 ntBASIC1.3□□□□□ -2.2
LMX1AQ8TE12 AC098614.4-201ENST00000607601 462 ntBASIC1.3□□□□□ -2.2
LMX1AQ8TE12 AC006338.1-201ENST00000618453 749 ntBASIC1.3□□□□□ -2.2
LMX1AQ8TE12 AC027514.1-201ENST00000588561 1603 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 Y_RNA.191-201ENST00000363972 113 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 RNU6-660P-201ENST00000364566 109 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 RNU4-28P-201ENST00000364739 141 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 RNU6-53P-201ENST00000365367 106 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AL591034.2-201ENST00000402839 359 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AL133475.1-201ENST00000404414 305 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 RNU2-48P-201ENST00000410694 191 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC016831.2-201ENST00000417179 352 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC006366.1-201ENST00000422002 759 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AL365338.1-201ENST00000422282 858 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 MTCO3P5-201ENST00000433620 714 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC118469.1-201ENST00000442943 488 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 SNORD11.1-201ENST00000459482 85 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC004223.1-201ENST00000479840 271 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 Y_RNA.689-201ENST00000516589 107 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 MRPS36P3-201ENST00000519284 130 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 MTND2P32-201ENST00000521584 1038 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AP003033.1-201ENST00000527244 415 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC011979.2-201ENST00000527568 352 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 OR5B19P-201ENST00000531766 928 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC135279.1-201ENST00000543493 504 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC092325.1-201ENST00000566449 554 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 MIR4285-201ENST00000581001 85 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 MIR4713-201ENST00000582691 75 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 BNIP3P25-201ENST00000596023 559 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC121334.2-201ENST00000605387 271 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC018638.7-201ENST00000605836 1114 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC126118.1-201ENST00000607744 628 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC096772.1-201ENST00000609146 564 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC092140.2-201ENST00000618027 521 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AP002782.1-201ENST00000623107 614 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AC092656.1-203ENST00000624134 423 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.29□□□□□ -2.2
LMX1AQ8TE12 AL445523.1-201ENST00000451184 1362 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 HAUS6P2-201ENST00000433254 2404 ntBASIC1.29□□□□□ -2.2
LMX1AQ8TE12 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 MIR412-201ENST00000362142 91 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 RNU6-500P-201ENST00000362349 107 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 RNU5E-1-201ENST00000362477 120 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 RNU6-622P-201ENST00000384272 103 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 MIR29C-201ENST00000385231 88 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 MIR934-201ENST00000401241 83 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 Y_RNA.623-201ENST00000411128 95 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC009518.2-201ENST00000418056 731 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 HSPE1P21-201ENST00000438283 308 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 snoU13.18-201ENST00000459483 104 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AP001025.1-201ENST00000486139 332 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 RPL36AP21-201ENST00000490372 323 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC112204.1-201ENST00000502591 103 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC096745.1-201ENST00000509945 370 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC008834.1-201ENST00000511612 175 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC084364.2-201ENST00000546924 395 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC025678.1-201ENST00000567861 338 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AL138889.2-201ENST00000603883 242 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AL359314.1-201ENST00000616913 261 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC017037.3-201ENST00000625016 472 ntBASIC1.28□□□□□ -2.2
LMX1AQ8TE12 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.28□□□□□ -2.2
LMX1AQ8TE12 SNORD114-19-201ENST00000363072 75 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 RNU1-23P-201ENST00000363361 144 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 RNU6-72P-201ENST00000384285 79 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 SNORA40.6-201ENST00000391153 128 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 RNA5SP465-201ENST00000391195 109 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 RNU6-955P-201ENST00000410497 104 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.27□□□□□ -2.21
LMX1AQ8TE12 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.27□□□□□ -2.21
LMX1AQ8TE12 AL627311.1-201ENST00000431514 115 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 RPL23AP30-201ENST00000432419 501 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 AL606517.1-201ENST00000446914 387 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.27□□□□□ -2.21
LMX1AQ8TE12 AL583843.1-201ENST00000456070 346 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.27□□□□□ -2.21
LMX1AQ8TE12 MTCO2P29-201ENST00000465212 189 ntBASIC1.27□□□□□ -2.21
LMX1AQ8TE12 MED28P2-201ENST00000475771 317 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms