Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-91P-201ENST00000607774 107 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC093788.1-201ENST00000609356 927 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 MIR219B-201ENST00000637023 88 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RNU6-858P-201ENST00000362436 107 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RNU6-78P-201ENST00000362897 107 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 Y_RNA.77-201ENST00000362962 107 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RNU4-48P-201ENST00000365559 182 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 SNORD116-1-201ENST00000384335 95 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1127P-201ENST00000384580 107 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 CDK8P2-201ENST00000415020 547 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC074117.2-201ENST00000417130 397 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AIMP1P2-201ENST00000425294 312 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RPL7P12-201ENST00000446719 750 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC098826.2-201ENST00000452011 651 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RNU6-956P-201ENST00000458868 103 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RNU7-182P-201ENST00000459009 62 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 HMGB1P30-201ENST00000492455 606 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 RN7SKP219-201ENST00000516825 296 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AP004607.1-201ENST00000524456 203 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AP002963.1-201ENST00000530590 184 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 SUB1P2-201ENST00000556401 297 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 MIR1273D-201ENST00000577266 86 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 MIR4529-201ENST00000578110 78 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 MIR3935-201ENST00000583472 104 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AP001596.2-201ENST00000608410 312 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC091834.1-201ENST00000614543 472 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC090582.1-201ENST00000636321 199 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 MTND5P6-201ENST00000422338 1798 ntBASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC54Q8NEL0 ZNF680P1-201ENST00000436625 1469 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 RNA5SP160-201ENST00000364866 120 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 GSTA9P-201ENST00000406231 611 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 RNU2-48P-201ENST00000410694 191 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 RNU6-387P-201ENST00000411331 105 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 UBE2V1P10-201ENST00000414685 269 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC007969.2-201ENST00000441891 191 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 MTND1P27-201ENST00000451117 902 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC006512.1-201ENST00000468816 291 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 RPL23AP42-201ENST00000471152 471 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC107032.1-201ENST00000485945 480 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1178P-201ENST00000516674 107 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 IGKV3-31-201ENST00000523109 329 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC093249.1-201ENST00000567049 203 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 MTATP6P3-201ENST00000581686 676 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC090897.2-201ENST00000581715 130 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 U4atac.1-201ENST00000618345 95 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 U6.42-201ENST00000618440 107 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AL159153.1-201ENST00000619688 317 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 Z69720.2-201ENST00000624755 279 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AP003400.5-201ENST00000624827 617 ntBASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.75□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1010P-201ENST00000362757 107 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1287P-201ENST00000362914 107 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 RNU6-1060P-201ENST00000384664 107 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 MIR186-201ENST00000384988 86 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 HMGB1P31-201ENST00000437242 427 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 MTAPP1-201ENST00000489154 819 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC091133.4-201ENST00000511142 308 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 RNU2-69P-201ENST00000516061 100 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 RNA5SP503-201ENST00000517047 117 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 SNORA25.17-201ENST00000517184 124 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AGGF1P4-201ENST00000568249 801 ntBASIC1.74□□□□□ -2.13
CCDC54Q8NEL0 AL391840.1-201ENST00000571144 367 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms