Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.65□□□□□ -1.83
USP39Q53GS9 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.65□□□□□ -1.83
USP39Q53GS9 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.65□□□□□ -1.83
USP39Q53GS9 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP39Q53GS9 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.65□□□□□ -1.83
USP39Q53GS9 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.65□□□□□ -1.83
USP39Q53GS9 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.64□□□□□ -1.83
USP39Q53GS9 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
USP39Q53GS9 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP39Q53GS9 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP39Q53GS9 AC004925.1-201ENST00000624256 2706 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
USP39Q53GS9 MIR335-201ENST00000362173 94 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 Y_RNA.29-201ENST00000362570 113 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 RNU6-280P-201ENST00000364145 104 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 RNU6-886P-201ENST00000384319 105 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
USP39Q53GS9 SNORA48.2-201ENST00000390926 124 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 AL513475.1-201ENST00000406602 315 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 Y_RNA.592-201ENST00000410274 109 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 RNU6-712P-201ENST00000410558 100 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 MTCO3P19-201ENST00000415864 321 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 RPS15AP6-201ENST00000420703 385 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.64□□□□□ -1.83
USP39Q53GS9 AC092573.2-201ENST00000434546 243 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 AC008716.1-201ENST00000511084 513 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.64□□□□□ -1.83
USP39Q53GS9 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.64□□□□□ -1.83
USP39Q53GS9 MIR5696-201ENST00000578474 85 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 MIR3910-1-201ENST00000580936 111 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.64□□□□□ -1.83
USP39Q53GS9 AL355877.2-201ENST00000603670 358 ntBASIC3.64□□□□□ -1.83
USP39Q53GS9 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP39Q53GS9 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP39Q53GS9 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP39Q53GS9 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.64□□□□□ -1.83
USP39Q53GS9 AC007256.1-201ENST00000392253 2765 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 CEP170P1-201ENST00000502249 4587 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
USP39Q53GS9 HSPA8P1-201ENST00000425843 1833 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
USP39Q53GS9 snoU2_19.2-201ENST00000363024 80 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 RNU6-595P-201ENST00000363944 107 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 Y_RNA.237-201ENST00000364439 102 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 RNU6-746P-201ENST00000384112 109 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 SNORA69.1-201ENST00000390904 137 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 RNA5SP129-201ENST00000410276 118 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 SDAD1P3-201ENST00000427380 333 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 AC092423.1-201ENST00000430165 186 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 HMGN2P20-201ENST00000437531 273 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 RN7SL330P-201ENST00000469709 307 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 AC010285.1-201ENST00000470580 392 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 AC022493.1-201ENST00000492984 337 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 RNU2-27P-201ENST00000516185 142 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 RNA5SP468-201ENST00000516782 93 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 MIR5047-201ENST00000579212 100 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.63□□□□□ -1.83
USP39Q53GS9 AC006077.1-201ENST00000604746 343 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 RMST_4.1-201ENST00000616886 107 ntBASIC3.63□□□□□ -1.83
USP39Q53GS9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP39Q53GS9 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP39Q53GS9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP39Q53GS9 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.63□□□□□ -1.83
USP39Q53GS9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.62□□□□□ -1.83
USP39Q53GS9 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
USP39Q53GS9 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.62□□□□□ -1.83
USP39Q53GS9 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USP39Q53GS9 RNU6-50P-201ENST00000362356 103 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 RNU6-1249P-201ENST00000363237 111 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 RNU6-1317P-201ENST00000364582 104 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 Y_RNA.297-201ENST00000364950 91 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 RNA5SP235-201ENST00000365411 114 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 RNU6-76P-201ENST00000384060 104 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 AC005326.1-201ENST00000429197 123 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 AC104332.1-201ENST00000440471 797 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.62□□□□□ -1.83
USP39Q53GS9 SNORA31.20-201ENST00000517111 133 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.62□□□□□ -1.83
USP39Q53GS9 MIR4474-201ENST00000579189 78 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 AC006557.5-201ENST00000603126 811 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 MIR4275-201ENST00000636486 87 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.62□□□□□ -1.83
USP39Q53GS9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USP39Q53GS9 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
USP39Q53GS9 ZNF299P-201ENST00000406845 1804 ntBASIC3.62□□□□□ -1.83
USP39Q53GS9 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
USP39Q53GS9 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
USP39Q53GS9 RNU1-76P-201ENST00000362903 159 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 RNU6-187P-201ENST00000384139 106 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 Y_RNA.458-201ENST00000384240 102 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 SNORA36C-201ENST00000384289 132 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AL603910.2-201ENST00000407268 136 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AL139156.1-201ENST00000412785 841 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 MTATP6P29-201ENST00000415057 132 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 U3.44-201ENST00000458938 192 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AC008155.2-201ENST00000464337 397 ntBASIC3.61□□□□□ -1.83
USP39Q53GS9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.61□□□□□ -1.83
USP39Q53GS9 AC067942.3-201ENST00000512025 362 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms