Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 HSPE1P4-201ENST00000550617 308 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.98□□□□□ -1.77
SF3A1Q15459 AC073410.2-201ENST00000603240 332 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 AL157817.1-201ENST00000614264 790 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 AC084757.4-201ENST00000616350 526 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.98□□□□□ -1.77
SF3A1Q15459 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SF3A1Q15459 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.97□□□□□ -1.77
SF3A1Q15459 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.97□□□□□ -1.77
SF3A1Q15459 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SF3A1Q15459 SNORA73.2-201ENST00000364946 201 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 Y_RNA.460-201ENST00000384255 102 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 RNU6-842P-201ENST00000384269 107 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 RNU6-310P-201ENST00000384655 107 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 USMG5P1-201ENST00000425964 177 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 PRSS3P4-201ENST00000453323 162 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.97□□□□□ -1.77
SF3A1Q15459 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.97□□□□□ -1.77
SF3A1Q15459 RNA5SP112-201ENST00000515937 99 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 MIR2276-201ENST00000516886 89 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 AC107934.2-201ENST00000518653 310 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.97□□□□□ -1.77
SF3A1Q15459 AC007375.1-201ENST00000554513 578 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.97□□□□□ -1.77
SF3A1Q15459 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.97□□□□□ -1.77
SF3A1Q15459 AC019176.2-201ENST00000611579 315 ntBASIC3.97□□□□□ -1.77
SF3A1Q15459 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.97□□□□□ -1.77
SF3A1Q15459 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SF3A1Q15459 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.97□□□□□ -1.77
SF3A1Q15459 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SF3A1Q15459 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.97□□□□□ -1.77
SF3A1Q15459 Z75746.1-201ENST00000440243 2080 ntBASIC3.96□□□□□ -1.77
SF3A1Q15459 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.96□□□□□ -1.78
SF3A1Q15459 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SF3A1Q15459 AC006026.1-201ENST00000444025 1803 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SF3A1Q15459 RNA5SP119-201ENST00000362715 117 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 Y_RNA.404-201ENST00000383978 102 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 Y_RNA.504-201ENST00000384481 104 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
SF3A1Q15459 RNU2-23P-201ENST00000410545 195 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 AC093578.1-201ENST00000415219 368 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 AP000907.1-201ENST00000428428 510 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 RPS4XP2-201ENST00000458402 793 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 AC010401.1-201ENST00000463867 348 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 RN7SL601P-201ENST00000471221 293 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 RPS26P21-201ENST00000475397 348 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 AC091874.1-201ENST00000511402 339 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.96□□□□□ -1.78
SF3A1Q15459 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.96□□□□□ -1.78
SF3A1Q15459 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.96□□□□□ -1.78
SF3A1Q15459 AC010620.2-201ENST00000600135 313 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 HMGB1P24-202ENST00000615653 685 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 AC012314.7-201ENST00000619693 93 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 AC098657.3-201ENST00000620434 263 ntBASIC3.96□□□□□ -1.78
SF3A1Q15459 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.96□□□□□ -1.78
SF3A1Q15459 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.96□□□□□ -1.78
SF3A1Q15459 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SF3A1Q15459 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SF3A1Q15459 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SF3A1Q15459 RNU6-1010P-201ENST00000362757 107 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 RNU6-1141P-201ENST00000364520 107 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AP002088.1-201ENST00000382740 395 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 Y_RNA.431-201ENST00000384086 102 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AL512633.1-201ENST00000399931 655 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AL591034.2-201ENST00000402839 359 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 Y_RNA.646-201ENST00000410980 101 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.95□□□□□ -1.78
SF3A1Q15459 MTND4P28-201ENST00000426217 387 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.95□□□□□ -1.78
SF3A1Q15459 AC006539.3-201ENST00000454258 129 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 SNORD105B-201ENST00000458770 79 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AC104619.4-201ENST00000510773 249 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 PHBP14-201ENST00000512887 367 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 RN7SKP18-201ENST00000516005 275 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 RNU1-95P-201ENST00000516357 160 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 RNU1-128P-201ENST00000516704 160 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 RNU6-307P-201ENST00000516743 106 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AL356157.2-201ENST00000605122 111 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AL050343.2-201ENST00000607338 280 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 AC135507.2-201ENST00000612443 309 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 MFSD8-233ENST00000641482 4860 ntBASIC3.95□□□□□ -1.78
SF3A1Q15459 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SF3A1Q15459 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SF3A1Q15459 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SF3A1Q15459 MTND5P9-201ENST00000503854 1755 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 SNORD32A-201ENST00000364805 84 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 Y_RNA.419-201ENST00000384041 102 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 RNU6-331P-201ENST00000384724 107 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 AC126124.2-201ENST00000413542 321 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.94□□□□□ -1.78
SF3A1Q15459 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.94□□□□□ -1.78
SF3A1Q15459 CYCSP4-201ENST00000429682 331 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.94□□□□□ -1.78
SF3A1Q15459 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.94□□□□□ -1.78
SF3A1Q15459 MTCO3P10-201ENST00000455912 772 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.94□□□□□ -1.78
SF3A1Q15459 CENPBD1P1-201ENST00000464061 469 ntBASIC3.94□□□□□ -1.78
SF3A1Q15459 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.94□□□□□ -1.78
SF3A1Q15459 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms