Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH2P43246 AC112220.1-201ENST00000434628 355 ntBASIC2.71□□□□□ -1.98
MSH2P43246 CR769767.1-201ENST00000436337 346 ntBASIC2.71□□□□□ -1.98
MSH2P43246 RPL36AP48-201ENST00000485521 314 ntBASIC2.71□□□□□ -1.98
MSH2P43246 SRIP1-201ENST00000489235 288 ntBASIC2.71□□□□□ -1.98
MSH2P43246 RPL22P13-201ENST00000493291 347 ntBASIC2.71□□□□□ -1.98
MSH2P43246 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.71□□□□□ -1.98
MSH2P43246 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.71□□□□□ -1.98
MSH2P43246 AC069113.1-201ENST00000517763 267 ntBASIC2.71□□□□□ -1.98
MSH2P43246 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH2P43246 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.71□□□□□ -1.98
MSH2P43246 AC009163.5-201ENST00000575421 637 ntBASIC2.71□□□□□ -1.98
MSH2P43246 APOOP1-201ENST00000604695 592 ntBASIC2.71□□□□□ -1.98
MSH2P43246 AC123912.5-201ENST00000605470 343 ntBASIC2.71□□□□□ -1.98
MSH2P43246 AC068944.2-201ENST00000610373 403 ntBASIC2.71□□□□□ -1.98
MSH2P43246 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.71□□□□□ -1.98
MSH2P43246 AL137790.1-201ENST00000634283 177 ntBASIC2.71□□□□□ -1.98
MSH2P43246 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
MSH2P43246 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
MSH2P43246 AC080100.1-201ENST00000624239 5356 ntBASIC2.7□□□□□ -1.98
MSH2P43246 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
MSH2P43246 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
MSH2P43246 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-37P-201ENST00000362692 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-11P-201ENST00000364234 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-7-201ENST00000364784 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-8-201ENST00000365467 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-25P-201ENST00000383873 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-1-201ENST00000383898 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-48P-201ENST00000384161 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-36P-201ENST00000384172 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-4P-201ENST00000384205 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-5P-201ENST00000384238 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-3P-201ENST00000384314 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-16P-201ENST00000384385 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-15P-201ENST00000384534 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 SNORA44-201ENST00000384584 132 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-2-201ENST00000384627 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-29P-201ENST00000384637 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-9-201ENST00000384776 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-33P-201ENST00000384793 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNA5SP210-201ENST00000391034 120 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-332P-201ENST00000391193 108 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AL133475.1-201ENST00000404414 305 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU4-26P-201ENST00000410270 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNA5SP118-201ENST00000410385 109 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH2P43246 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH2P43246 NFU1P2-201ENST00000448700 469 ntBASIC2.7□□□□□ -1.98
MSH2P43246 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH2P43246 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH2P43246 AC080013.2-201ENST00000460866 323 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AC117503.1-201ENST00000472241 394 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AC096576.1-201ENST00000489014 359 ntBASIC2.7□□□□□ -1.98
MSH2P43246 Y_RNA.665-201ENST00000516177 98 ntBASIC2.7□□□□□ -1.98
MSH2P43246 SNORA43.2-201ENST00000516652 128 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AC023050.3-201ENST00000541142 333 ntBASIC2.7□□□□□ -1.98
MSH2P43246 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH2P43246 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.7□□□□□ -1.98
MSH2P43246 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH2P43246 MIR4635-201ENST00000583759 79 ntBASIC2.7□□□□□ -1.98
MSH2P43246 BNIP3P25-201ENST00000596023 559 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AL670379.10-201ENST00000604330 253 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AL670379.9-201ENST00000605428 253 ntBASIC2.7□□□□□ -1.98
MSH2P43246 RNU6-6P-201ENST00000606623 107 ntBASIC2.7□□□□□ -1.98
MSH2P43246 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH2P43246 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
MSH2P43246 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
MSH2P43246 AC121333.1-201ENST00000567488 2709 ntBASIC2.7□□□□□ -1.98
MSH2P43246 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
MSH2P43246 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
MSH2P43246 Z75746.1-201ENST00000440243 2080 ntBASIC2.7□□□□□ -1.98
MSH2P43246 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.7□□□□□ -1.98
MSH2P43246 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH2P43246 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH2P43246 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
MSH2P43246 RNU6-858P-201ENST00000362436 107 ntBASIC2.69□□□□□ -1.98
MSH2P43246 U3.12-201ENST00000364498 214 ntBASIC2.69□□□□□ -1.98
MSH2P43246 RNU5E-7P-201ENST00000365290 117 ntBASIC2.69□□□□□ -1.98
MSH2P43246 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH2P43246 U6atac.2-201ENST00000408644 118 ntBASIC2.69□□□□□ -1.98
MSH2P43246 CYCSP48-201ENST00000417124 323 ntBASIC2.69□□□□□ -1.98
MSH2P43246 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH2P43246 MRPS10P2-201ENST00000431226 381 ntBASIC2.69□□□□□ -1.98
MSH2P43246 AL139132.1-201ENST00000431587 344 ntBASIC2.69□□□□□ -1.98
MSH2P43246 AL139415.2-201ENST00000431968 163 ntBASIC2.69□□□□□ -1.98
MSH2P43246 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.69□□□□□ -1.98
MSH2P43246 HMGB1P31-201ENST00000437242 427 ntBASIC2.69□□□□□ -1.98
MSH2P43246 AC006026.2-201ENST00000457376 180 ntBASIC2.69□□□□□ -1.98
MSH2P43246 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.69□□□□□ -1.98
MSH2P43246 MED28P2-201ENST00000475771 317 ntBASIC2.69□□□□□ -1.98
MSH2P43246 AC083904.1-201ENST00000487828 231 ntBASIC2.69□□□□□ -1.98
MSH2P43246 MTCYBP18-201ENST00000501056 747 ntBASIC2.69□□□□□ -1.98
MSH2P43246 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH2P43246 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH2P43246 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH2P43246 RNA5SP402-201ENST00000517148 110 ntBASIC2.69□□□□□ -1.98
MSH2P43246 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
MSH2P43246 CR383656.8-201ENST00000549046 145 ntBASIC2.69□□□□□ -1.98
MSH2P43246 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms