Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC012065.4-201ENST00000602445 679 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AP000403.1-201ENST00000603349 851 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AL355877.2-201ENST00000603670 358 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC239868.4-201ENST00000608318 671 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.32□□□□□ -2.2
COL5A3P25940 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
COL5A3P25940 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
COL5A3P25940 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 AL603758.1-201ENST00000618654 241 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
COL5A3P25940 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
COL5A3P25940 RNU6-741P-201ENST00000383889 107 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 RNU6-140P-201ENST00000384566 108 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 MRPL42P2-201ENST00000403169 426 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 NDUFB4P7-201ENST00000423198 363 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC098934.3-201ENST00000430450 190 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.32□□□□□ -2.2
COL5A3P25940 Z82210.1-201ENST00000440037 231 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 MTCO3P45-201ENST00000443036 613 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC010486.3-201ENST00000511602 785 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 NRON-201ENST00000517270 370 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC036111.3-201ENST00000526389 112 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.32□□□□□ -2.2
COL5A3P25940 AC007151.1-201ENST00000572774 483 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC137800.2-201ENST00000574375 120 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.32□□□□□ -2.2
COL5A3P25940 BCRP9-201ENST00000605312 388 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 AC022513.1-201ENST00000624512 117 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 MIR3974-201ENST00000637126 96 ntBASIC1.32□□□□□ -2.2
COL5A3P25940 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
COL5A3P25940 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
COL5A3P25940 AC092104.1-201ENST00000497346 1441 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 Y_RNA.46-201ENST00000362695 102 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 U3.4-201ENST00000363352 213 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RNU5E-5P-201ENST00000365379 116 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RNU5E-6P-201ENST00000365574 115 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RNU6-1105P-201ENST00000384774 107 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 MIR532-201ENST00000385025 91 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
COL5A3P25940 U8.14-201ENST00000390843 143 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 MIR888-201ENST00000401186 77 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 AC006366.1-201ENST00000422002 759 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 AL590383.1-201ENST00000428602 75 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 MED14P1-201ENST00000430517 648 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.31□□□□□ -2.2
COL5A3P25940 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 RPS27P1-201ENST00000450552 247 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 ZNF114P1-201ENST00000453500 292 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 SNORD97-201ENST00000459187 142 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 MRPS17P3-201ENST00000465453 385 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 MTND1P3-201ENST00000484956 952 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 LARP1BP2-201ENST00000486594 519 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 AC022447.1-201ENST00000515358 464 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RNU6-390P-201ENST00000516259 103 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RNU2-10P-201ENST00000516375 211 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RNU6-928P-201ENST00000516876 104 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 SCARNA3-201ENST00000517097 143 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RN7SKP258-201ENST00000517151 304 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 RNA5SP291-201ENST00000517222 105 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 MTND2P38-201ENST00000522536 667 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC1.31□□□□□ -2.2
COL5A3P25940 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.31□□□□□ -2.2
COL5A3P25940 AL391261.3-201ENST00000557194 520 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.31□□□□□ -2.2
COL5A3P25940 AC002400.1-201ENST00000569310 726 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 CLIC4P2-201ENST00000601934 717 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
COL5A3P25940 AC013476.2-201ENST00000614456 459 ntBASIC1.31□□□□□ -2.2
COL5A3P25940 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
COL5A3P25940 RNU6-553P-201ENST00000364047 96 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 RNU6-270P-201ENST00000364131 105 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 RNU1-39P-201ENST00000383897 165 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 SNORD116-9-201ENST00000384000 95 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 SNORD116-3-201ENST00000384287 95 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 SNORD116-7-201ENST00000384404 95 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 SNORD116-5-201ENST00000384462 95 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 SNORA40.3-201ENST00000390964 122 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 SNORA26.8-201ENST00000391306 124 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AL109755.1-201ENST00000401791 649 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.3□□□□□ -2.2
COL5A3P25940 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.3□□□□□ -2.2
COL5A3P25940 ELOCP17-201ENST00000414751 326 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.3□□□□□ -2.2
COL5A3P25940 AIMP1P2-201ENST00000425294 312 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.3□□□□□ -2.2
COL5A3P25940 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC1.3□□□□□ -2.2
COL5A3P25940 MTND2P4-201ENST00000445034 1004 ntBASIC1.3□□□□□ -2.2
COL5A3P25940 PMCHL2-203ENST00000457791 237 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms