Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-434P-201ENST00000384376 107 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 MIR27B-201ENST00000385129 97 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
HOXD4P09016 RNA5SP219-201ENST00000390940 113 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 RNU2-68P-201ENST00000410878 191 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 POLHP1-201ENST00000411806 470 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXD4P09016 AC022028.1-201ENST00000412054 408 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AL513477.1-202ENST00000417061 214 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXD4P09016 AC009414.1-201ENST00000427200 443 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 PRPS1P1-201ENST00000445305 876 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 PMCHL2-203ENST00000457791 237 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC083904.1-201ENST00000487828 231 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXD4P09016 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXD4P09016 MTND3P25-201ENST00000509243 135 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC104136.1-201ENST00000512969 394 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 RNU6-1314P-201ENST00000517139 104 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC025755.1-201ENST00000521306 278 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXD4P09016 AC090115.3-201ENST00000553218 849 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXD4P09016 MTCO3P23-201ENST00000561363 289 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 MYL12BP1-201ENST00000569826 507 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
HOXD4P09016 VN1R80P-201ENST00000597126 338 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC007938.3-201ENST00000604965 623 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 CTHRC1P1-201ENST00000605383 469 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 UCA1.1-201ENST00000620952 75 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 U4.3-201ENST00000621047 82 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 AC022418.1-201ENST00000624118 445 ntBASIC2.35□□□□□ -2.03
HOXD4P09016 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXD4P09016 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
HOXD4P09016 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
HOXD4P09016 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
HOXD4P09016 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RNU5E-4P-201ENST00000364931 120 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 Y_RNA.373-201ENST00000365600 103 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 Y_RNA.399-201ENST00000383955 105 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RNU6-1179P-201ENST00000384667 107 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD4P09016 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD4P09016 ARL5AP1-201ENST00000418991 388 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RPL7P37-201ENST00000425095 738 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AL513185.2-201ENST00000425543 193 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC098614.3-201ENST00000438957 440 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RPS15AP7-201ENST00000439294 405 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXD4P09016 MTND5P20-201ENST00000448677 143 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.34□□□□□ -2.03
HOXD4P09016 RNU7-167P-201ENST00000459160 62 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RNU7-66P-201ENST00000459469 62 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC007547.1-201ENST00000462177 490 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RPL31P41-201ENST00000477967 372 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC008628.2-201ENST00000502605 298 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXD4P09016 RNU6-237P-201ENST00000515985 71 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RNU6-507P-201ENST00000516045 100 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 RNU6-189P-201ENST00000516120 101 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 Y_RNA.702-201ENST00000516843 96 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.34□□□□□ -2.03
HOXD4P09016 BTF3P12-201ENST00000519620 469 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC107953.1-201ENST00000522216 297 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD4P09016 AC025281.1-201ENST00000567026 265 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 MIR5692A1-201ENST00000580523 69 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 AC011712.1-201ENST00000588959 234 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 U2.17-201ENST00000611454 95 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXD4P09016 AL008636.1-201ENST00000625038 1018 ntBASIC2.34□□□□□ -2.03
HOXD4P09016 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXD4P09016 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
HOXD4P09016 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.04
HOXD4P09016 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.34□□□□□ -2.04
HOXD4P09016 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.34□□□□□ -2.04
HOXD4P09016 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD4P09016 SNORD62.1-201ENST00000362541 86 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 U8.2-201ENST00000363156 134 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 SNORA32.2-201ENST00000384049 122 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
HOXD4P09016 AL356057.3-201ENST00000402607 340 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AC009161.1-201ENST00000417306 376 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXD4P09016 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD4P09016 USP9YP8-201ENST00000441913 500 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXD4P09016 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD4P09016 AC087884.1-201ENST00000469738 328 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXD4P09016 HMGN1P12-201ENST00000499125 195 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 FAM206BP-201ENST00000510179 541 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AC008716.1-201ENST00000511084 513 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AC008549.1-201ENST00000512900 643 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 RNU1-86P-201ENST00000516108 154 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 RNU1-107P-201ENST00000516617 154 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 SNORA31.19-201ENST00000517079 126 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 IGLV3-17-201ENST00000519099 244 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms