Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC131281.1-201ENST00000522984 164 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 AC023157.2-201ENST00000540596 141 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.41□□□□□ -1.86
COL3A1P02461 AC008521.1-201ENST00000587471 187 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
COL3A1P02461 AL670379.6-201ENST00000603753 252 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 Z98751.3-201ENST00000604447 521 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 AL670379.1-201ENST00000604752 252 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 AL670379.5-201ENST00000605253 252 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 AL670379.8-201ENST00000605353 252 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 AL670379.7-201ENST00000605823 252 ntBASIC3.41□□□□□ -1.86
COL3A1P02461 AC010615.1-201ENST00000594254 1764 ntBASIC3.4□□□□□ -1.86
COL3A1P02461 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
COL3A1P02461 AC009313.2-201ENST00000417893 1941 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL3A1P02461 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL3A1P02461 Y_RNA.210-201ENST00000364161 110 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU6-450P-201ENST00000364654 107 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 SNORA51.4-201ENST00000364993 124 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 SNORD14.1-201ENST00000365609 90 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU6-1293P-201ENST00000384077 107 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU6-214P-201ENST00000384130 107 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 Y_RNA.515-201ENST00000384535 112 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU6-754P-201ENST00000391166 107 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 MIR1302-6-201ENST00000408466 90 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.4□□□□□ -1.87
COL3A1P02461 HMGB1P9-201ENST00000429856 646 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RPS15AP10-201ENST00000432472 382 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.4□□□□□ -1.87
COL3A1P02461 AL354710.1-201ENST00000453641 246 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.4□□□□□ -1.87
COL3A1P02461 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.4□□□□□ -1.87
COL3A1P02461 RBBP4P6-201ENST00000508098 202 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 SCARNA16.2-201ENST00000516520 172 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU4-77P-201ENST00000516692 156 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU6-685P-201ENST00000517088 95 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU6-323P-201ENST00000521915 107 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 CYCSP27-201ENST00000527643 293 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 AC092470.1-201ENST00000546187 132 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.4□□□□□ -1.87
COL3A1P02461 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.4□□□□□ -1.87
COL3A1P02461 AC006254.3-201ENST00000603353 884 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 AC103810.6-201ENST00000606708 136 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 AL355810.1-201ENST00000614629 552 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 RNU6-156P-201ENST00000621869 107 ntBASIC3.4□□□□□ -1.87
COL3A1P02461 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL3A1P02461 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL3A1P02461 RNA5SP289-201ENST00000362332 137 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 RNA5SP391-201ENST00000363456 119 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 RNU6-1284P-201ENST00000363701 100 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 RNVU1-3-201ENST00000364313 161 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 SNORA20.1-201ENST00000364790 130 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 MIR1252-201ENST00000408861 65 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.39□□□□□ -1.87
COL3A1P02461 AL590632.1-201ENST00000424289 371 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL3A1P02461 MYL8P-204ENST00000431574 518 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 AL353597.2-202ENST00000434901 373 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.39□□□□□ -1.87
COL3A1P02461 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL3A1P02461 SNRPGP5-201ENST00000456003 220 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 SNORD127-201ENST00000458892 86 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 snoU13.7-201ENST00000459220 104 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 RPS23P3-201ENST00000470993 430 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 AC135721.1-201ENST00000497954 479 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 AC114801.2-201ENST00000503825 781 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.39□□□□□ -1.87
COL3A1P02461 RNU6-406P-201ENST00000516470 107 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.39□□□□□ -1.87
COL3A1P02461 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.39□□□□□ -1.87
COL3A1P02461 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.39□□□□□ -1.87
COL3A1P02461 MIR4293-201ENST00000584305 78 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.39□□□□□ -1.87
COL3A1P02461 AC078899.3-201ENST00000599065 212 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 SNORD58B-201ENST00000607313 66 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 AC107294.3-201ENST00000609211 526 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 MIR6733-201ENST00000635723 61 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 U6.104-201ENST00000637979 90 ntBASIC3.39□□□□□ -1.87
COL3A1P02461 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
COL3A1P02461 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL3A1P02461 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL3A1P02461 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.38□□□□□ -1.87
COL3A1P02461 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
COL3A1P02461 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL3A1P02461 Y_RNA.117-201ENST00000363294 101 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL3A1P02461 MIR196B-201ENST00000384852 84 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 RNA5SP111-201ENST00000411386 101 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 USP9YP30-201ENST00000430729 455 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.38□□□□□ -1.87
COL3A1P02461 AL513328.1-201ENST00000446460 224 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AL513124.1-201ENST00000450410 614 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AL353752.1-201ENST00000454946 260 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AC009901.1-201ENST00000506703 541 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AC096745.1-201ENST00000509945 370 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.38□□□□□ -1.87
COL3A1P02461 RNA5SP384-201ENST00000516615 116 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.38□□□□□ -1.87
COL3A1P02461 OR5D17P-201ENST00000531492 978 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms