Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AL139344.1-201ENST00000605228 195 ntBASIC0.33□□□□□ -2.36
TNFP01375 AL365434.2-201ENST00000607979 234 ntBASIC0.33□□□□□ -2.36
TNFP01375 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.33□□□□□ -2.36
TNFP01375 AC104465.1-201ENST00000611365 139 ntBASIC0.33□□□□□ -2.36
TNFP01375 AL590240.4-201ENST00000616908 390 ntBASIC0.33□□□□□ -2.36
TNFP01375 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.33□□□□□ -2.36
TNFP01375 AC002550.2-201ENST00000621246 394 ntBASIC0.33□□□□□ -2.36
TNFP01375 AC009269.6-201ENST00000621778 588 ntBASIC0.33□□□□□ -2.36
TNFP01375 AC090617.9-201ENST00000623751 147 ntBASIC0.33□□□□□ -2.36
TNFP01375 Z69720.2-201ENST00000624755 279 ntBASIC0.33□□□□□ -2.36
TNFP01375 AC068647.2-201ENST00000637380 353 ntBASIC0.33□□□□□ -2.36
TNFP01375 MIR924-201ENST00000638017 53 ntBASIC0.33□□□□□ -2.36
TNFP01375 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC0.32□□□□□ -2.36
TNFP01375 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.32□□□□□ -2.36
TNFP01375 RNU6-637P-201ENST00000384050 107 ntBASIC0.32□□□□□ -2.36
TNFP01375 AC138623.1-201ENST00000418060 216 ntBASIC0.32□□□□□ -2.36
TNFP01375 GPM6BP2-201ENST00000432046 144 ntBASIC0.32□□□□□ -2.36
TNFP01375 TIMM9P1-201ENST00000436122 256 ntBASIC0.32□□□□□ -2.36
TNFP01375 GPM6BP1-201ENST00000446387 144 ntBASIC0.32□□□□□ -2.36
TNFP01375 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC0.32□□□□□ -2.36
TNFP01375 AC130509.1-201ENST00000464158 433 ntBASIC0.32□□□□□ -2.36
TNFP01375 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.32□□□□□ -2.36
TNFP01375 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.32□□□□□ -2.36
TNFP01375 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.32□□□□□ -2.36
TNFP01375 AC136619.2-201ENST00000563361 631 ntBASIC0.32□□□□□ -2.36
TNFP01375 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC0.32□□□□□ -2.36
TNFP01375 AL031775.1-201ENST00000607014 887 ntBASIC0.32□□□□□ -2.36
TNFP01375 AC018926.1-201ENST00000616335 435 ntBASIC0.32□□□□□ -2.36
TNFP01375 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.32□□□□□ -2.36
TNFP01375 AL596245.1-201ENST00000618994 362 ntBASIC0.32□□□□□ -2.36
TNFP01375 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.32□□□□□ -2.36
TNFP01375 AC022513.1-201ENST00000624512 117 ntBASIC0.32□□□□□ -2.36
TNFP01375 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.32□□□□□ -2.36
TNFP01375 DBF4P1-201ENST00000412976 1892 ntBASIC0.32□□□□□ -2.36
TNFP01375 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
TNFP01375 RNU6-1167P-201ENST00000363227 94 ntBASIC0.31□□□□□ -2.36
TNFP01375 RNU2-7P-201ENST00000410794 178 ntBASIC0.31□□□□□ -2.36
TNFP01375 RAC1P8-201ENST00000427086 527 ntBASIC0.31□□□□□ -2.36
TNFP01375 C8orf59P1-201ENST00000429930 303 ntBASIC0.31□□□□□ -2.36
TNFP01375 CETN4P-201ENST00000432407 469 ntBASIC0.31□□□□□ -2.36
TNFP01375 MTND4P6-201ENST00000438297 472 ntBASIC0.31□□□□□ -2.36
TNFP01375 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.31□□□□□ -2.36
TNFP01375 AC074344.1-201ENST00000512823 224 ntBASIC0.31□□□□□ -2.36
TNFP01375 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.31□□□□□ -2.36
TNFP01375 RNU6-927P-201ENST00000516199 100 ntBASIC0.31□□□□□ -2.36
TNFP01375 RNA5SP135-201ENST00000517019 125 ntBASIC0.31□□□□□ -2.36
TNFP01375 RNU6-1183P-201ENST00000517054 60 ntBASIC0.31□□□□□ -2.36
TNFP01375 AC025423.5-201ENST00000550230 219 ntBASIC0.31□□□□□ -2.36
TNFP01375 MIR3664-201ENST00000579074 99 ntBASIC0.31□□□□□ -2.36
TNFP01375 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC0.31□□□□□ -2.36
TNFP01375 AC090578.1-201ENST00000604955 591 ntBASIC0.31□□□□□ -2.36
TNFP01375 MIR6134-201ENST00000617606 109 ntBASIC0.31□□□□□ -2.36
TNFP01375 AC008133.2-201ENST00000624540 351 ntBASIC0.31□□□□□ -2.36
TNFP01375 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
TNFP01375 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.3□□□□□ -2.36
TNFP01375 RNU6-110P-201ENST00000384508 104 ntBASIC0.3□□□□□ -2.36
TNFP01375 Y_RNA.548-201ENST00000384656 105 ntBASIC0.3□□□□□ -2.36
TNFP01375 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
TNFP01375 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.3□□□□□ -2.36
TNFP01375 MTND5P8-201ENST00000449817 1083 ntBASIC0.3□□□□□ -2.36
TNFP01375 AC007395.1-201ENST00000451333 677 ntBASIC0.3□□□□□ -2.36
TNFP01375 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.3□□□□□ -2.36
TNFP01375 MTND5P13-201ENST00000513046 1079 ntBASIC0.3□□□□□ -2.36
TNFP01375 HMGN1P30-201ENST00000589286 268 ntBASIC0.3□□□□□ -2.36
TNFP01375 AC068790.6-201ENST00000602558 258 ntBASIC0.3□□□□□ -2.36
TNFP01375 AP000654.2-201ENST00000605633 586 ntBASIC0.3□□□□□ -2.36
TNFP01375 AC009237.15-201ENST00000610252 501 ntBASIC0.3□□□□□ -2.36
TNFP01375 RMST_4.1-201ENST00000616886 107 ntBASIC0.3□□□□□ -2.36
TNFP01375 U6.99-201ENST00000637524 83 ntBASIC0.3□□□□□ -2.36
TNFP01375 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.3□□□□□ -2.36
TNFP01375 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
TNFP01375 RNU4-12P-201ENST00000365233 139 ntBASIC0.29□□□□□ -2.36
TNFP01375 MIR548B-201ENST00000385247 97 ntBASIC0.29□□□□□ -2.36
TNFP01375 RNU2-70P-201ENST00000410718 179 ntBASIC0.29□□□□□ -2.36
TNFP01375 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
TNFP01375 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
TNFP01375 AC244023.1-201ENST00000426884 112 ntBASIC0.29□□□□□ -2.36
TNFP01375 GTF2IP13-201ENST00000438487 386 ntBASIC0.29□□□□□ -2.36
TNFP01375 AC073614.1-201ENST00000438690 650 ntBASIC0.29□□□□□ -2.36
TNFP01375 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.29□□□□□ -2.36
TNFP01375 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.29□□□□□ -2.36
TNFP01375 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.29□□□□□ -2.36
TNFP01375 RNA5SP168-201ENST00000516642 112 ntBASIC0.29□□□□□ -2.36
TNFP01375 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.29□□□□□ -2.36
TNFP01375 AC090615.1-201ENST00000577519 154 ntBASIC0.29□□□□□ -2.36
TNFP01375 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.29□□□□□ -2.36
TNFP01375 AL353997.4-201ENST00000586196 166 ntBASIC0.29□□□□□ -2.36
TNFP01375 AC242498.1-201ENST00000604134 111 ntBASIC0.29□□□□□ -2.36
TNFP01375 AC105129.3-201ENST00000605455 485 ntBASIC0.29□□□□□ -2.36
TNFP01375 uc_338.15-201ENST00000615470 191 ntBASIC0.29□□□□□ -2.36
TNFP01375 AC243994.1-201ENST00000618627 109 ntBASIC0.29□□□□□ -2.36
TNFP01375 AC091925.1-201ENST00000623204 462 ntBASIC0.29□□□□□ -2.36
TNFP01375 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
TNFP01375 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
TNFP01375 AC134026.1-201ENST00000623249 2239 ntBASIC0.28□□□□□ -2.36
TNFP01375 FARSBP1-201ENST00000435808 1778 ntBASIC0.28□□□□□ -2.36
TNFP01375 MIR330-201ENST00000362196 94 ntBASIC0.28□□□□□ -2.36
TNFP01375 U3.8-201ENST00000363675 217 ntBASIC0.28□□□□□ -2.36
TNFP01375 RNU6-944P-201ENST00000364023 107 ntBASIC0.28□□□□□ -2.36
TNFP01375 RNU6-1078P-201ENST00000364522 103 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms