Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AP001596.2-201ENST00000608410 312 ntBASIC2.16□□□□□ -2.06
SDC3O75056 MIR3529-201ENST00000637713 78 ntBASIC2.16□□□□□ -2.06
SDC3O75056 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
SDC3O75056 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.15□□□□□ -2.07
SDC3O75056 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
SDC3O75056 Y_RNA.159-201ENST00000363674 87 ntBASIC2.15□□□□□ -2.07
SDC3O75056 RNA5SP240-201ENST00000365355 128 ntBASIC2.15□□□□□ -2.07
SDC3O75056 RNU5A-6P-201ENST00000384136 116 ntBASIC2.15□□□□□ -2.07
SDC3O75056 RNU6-1119P-201ENST00000384349 108 ntBASIC2.15□□□□□ -2.07
SDC3O75056 RNU6-843P-201ENST00000384454 104 ntBASIC2.15□□□□□ -2.07
SDC3O75056 Y_RNA.582-201ENST00000391023 95 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AL591416.1-201ENST00000404015 867 ntBASIC2.15□□□□□ -2.07
SDC3O75056 RNU2-3P-201ENST00000410144 191 ntBASIC2.15□□□□□ -2.07
SDC3O75056 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.15□□□□□ -2.07
SDC3O75056 AC138623.1-201ENST00000418060 216 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.15□□□□□ -2.07
SDC3O75056 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.15□□□□□ -2.07
SDC3O75056 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.15□□□□□ -2.07
SDC3O75056 CALM1P1-201ENST00000442082 433 ntBASIC2.15□□□□□ -2.07
SDC3O75056 MTATP6P26-201ENST00000445926 662 ntBASIC2.15□□□□□ -2.07
SDC3O75056 MTND1P29-201ENST00000448112 647 ntBASIC2.15□□□□□ -2.07
SDC3O75056 MTND1P18-201ENST00000448191 573 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.15□□□□□ -2.07
SDC3O75056 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.15□□□□□ -2.07
SDC3O75056 CYP2C59P-201ENST00000457790 269 ntBASIC2.15□□□□□ -2.07
SDC3O75056 RPS29P15-201ENST00000458329 171 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AC117503.1-201ENST00000472241 394 ntBASIC2.15□□□□□ -2.07
SDC3O75056 HMGB1P29-201ENST00000505659 499 ntBASIC2.15□□□□□ -2.07
SDC3O75056 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.15□□□□□ -2.07
SDC3O75056 AC008526.1-201ENST00000509149 338 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AC116337.1-201ENST00000509680 687 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AC105417.1-201ENST00000514691 285 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AC135279.1-201ENST00000543493 504 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.15□□□□□ -2.07
SDC3O75056 AC096772.1-201ENST00000609146 564 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AL161423.1-201ENST00000613700 262 ntBASIC2.15□□□□□ -2.07
SDC3O75056 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.15□□□□□ -2.07
SDC3O75056 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.15□□□□□ -2.07
SDC3O75056 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.15□□□□□ -2.07
SDC3O75056 AC012640.5-201ENST00000623897 319 ntBASIC2.15□□□□□ -2.07
SDC3O75056 AL160394.1-201ENST00000624765 724 ntBASIC2.15□□□□□ -2.07
SDC3O75056 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
SDC3O75056 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
SDC3O75056 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.15□□□□□ -2.07
SDC3O75056 ZNF680P1-201ENST00000436625 1469 ntBASIC2.14□□□□□ -2.07
SDC3O75056 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SDC3O75056 OR4G2P-201ENST00000328113 903 ntBASIC2.14□□□□□ -2.07
SDC3O75056 Y_RNA.359-201ENST00000365498 102 ntBASIC2.14□□□□□ -2.07
SDC3O75056 RNU6-45P-201ENST00000384471 107 ntBASIC2.14□□□□□ -2.07
SDC3O75056 RAP1BP3-201ENST00000407180 549 ntBASIC2.14□□□□□ -2.07
SDC3O75056 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.14□□□□□ -2.07
SDC3O75056 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC3O75056 AL669831.1-202ENST00000428504 417 ntBASIC2.14□□□□□ -2.07
SDC3O75056 GTF2IP13-201ENST00000438487 386 ntBASIC2.14□□□□□ -2.07
SDC3O75056 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC3O75056 AL031659.1-201ENST00000447075 539 ntBASIC2.14□□□□□ -2.07
SDC3O75056 AC006026.2-201ENST00000457376 180 ntBASIC2.14□□□□□ -2.07
SDC3O75056 TPT1P7-201ENST00000458300 517 ntBASIC2.14□□□□□ -2.07
SDC3O75056 snoU109.2-201ENST00000459316 135 ntBASIC2.14□□□□□ -2.07
SDC3O75056 AC079382.1-201ENST00000493346 557 ntBASIC2.14□□□□□ -2.07
SDC3O75056 MTND3P25-201ENST00000509243 135 ntBASIC2.14□□□□□ -2.07
SDC3O75056 AC010493.1-201ENST00000513479 292 ntBASIC2.14□□□□□ -2.07
SDC3O75056 LRRC34P2-201ENST00000514850 553 ntBASIC2.14□□□□□ -2.07
SDC3O75056 Y_RNA.687-201ENST00000516558 91 ntBASIC2.14□□□□□ -2.07
SDC3O75056 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.14□□□□□ -2.07
SDC3O75056 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.14□□□□□ -2.07
SDC3O75056 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.14□□□□□ -2.07
SDC3O75056 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.14□□□□□ -2.07
SDC3O75056 AC009233.1-201ENST00000616477 371 ntBASIC2.14□□□□□ -2.07
SDC3O75056 U4atac.1-201ENST00000618345 95 ntBASIC2.14□□□□□ -2.07
SDC3O75056 MIR6132-201ENST00000622083 109 ntBASIC2.14□□□□□ -2.07
SDC3O75056 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.14□□□□□ -2.07
SDC3O75056 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
SDC3O75056 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
SDC3O75056 AL356292.1-201ENST00000283110 373 ntBASIC2.13□□□□□ -2.07
SDC3O75056 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.13□□□□□ -2.07
SDC3O75056 Y_RNA.51-201ENST00000362725 102 ntBASIC2.13□□□□□ -2.07
SDC3O75056 RNU6-715P-201ENST00000365204 103 ntBASIC2.13□□□□□ -2.07
SDC3O75056 RNU2-29P-201ENST00000410423 189 ntBASIC2.13□□□□□ -2.07
SDC3O75056 RNA5SP270-201ENST00000411361 118 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC3O75056 CYCSP33-201ENST00000414485 327 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC3O75056 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC3O75056 AL118520.1-201ENST00000450770 291 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC3O75056 AC108078.1-201ENST00000508073 725 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AC074344.1-201ENST00000512823 224 ntBASIC2.13□□□□□ -2.07
SDC3O75056 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.13□□□□□ -2.07
SDC3O75056 AP005435.4-201ENST00000529514 284 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AC118273.2-201ENST00000532092 465 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.13□□□□□ -2.07
SDC3O75056 AC136619.2-201ENST00000563361 631 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.13□□□□□ -2.07
SDC3O75056 MIR3611-201ENST00000584484 83 ntBASIC2.13□□□□□ -2.07
SDC3O75056 AC078795.2-201ENST00000602835 1252 ntBASIC2.13□□□□□ -2.07
SDC3O75056 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SDC3O75056 MIR6840-201ENST00000611937 71 ntBASIC2.13□□□□□ -2.07
SDC3O75056 RMST_7.1-201ENST00000621935 268 ntBASIC2.13□□□□□ -2.07
SDC3O75056 MIR203B-201ENST00000636080 86 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms