Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 AC060766.3-201ENST00000591442 263 ntBASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC87Q9NVE4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 UBE3AP2-201ENST00000429033 2259 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RNU6-527P-201ENST00000363425 104 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.358-201ENST00000365491 99 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.458-201ENST00000384240 102 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RNY3P4-201ENST00000384428 101 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 U3.26-201ENST00000391236 204 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RPL21P75-201ENST00000396599 483 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RPL21P28-201ENST00000401418 483 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AL590556.1-201ENST00000423231 483 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC096920.1-201ENST00000423991 241 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 MTCO3P29-201ENST00000432119 779 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RPL37P4-201ENST00000448908 268 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RPL21P39-201ENST00000463605 483 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC087190.1-201ENST00000484462 480 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC107032.1-201ENST00000485945 480 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC132942.1-201ENST00000486753 483 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC093591.1-201ENST00000491435 481 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RPL23AP49-201ENST00000492925 468 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 RPL21P16-201ENST00000495531 483 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.680-201ENST00000516441 93 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC008011.1-201ENST00000545989 227 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 YPEL5P2-201ENST00000605553 359 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 U2.21-201ENST00000637295 81 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 MTND5P6-201ENST00000422338 1798 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 AC090740.1-201ENST00000623193 2262 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 SRP72P2-201ENST00000344851 1979 ntBASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
CCDC87Q9NVE4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 FAM35BP-202ENST00000497389 3337 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 AC011266.1-201ENST00000624119 3569 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 RNA5SP104-201ENST00000410989 118 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 EIF1AXP1-201ENST00000419267 435 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 HMGN2P30-201ENST00000423237 256 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 AL591043.1-201ENST00000432461 424 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 RPL21P104-201ENST00000464143 478 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 ANXA2P1-201ENST00000505539 926 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 RNU2-27P-201ENST00000516185 142 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 AP002770.2-201ENST00000543613 532 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC87Q9NVE4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC87Q9NVE4 AC233981.2-201ENST00000611524 1614 ntBASIC4.65□□□□□ -1.66
CCDC87Q9NVE4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC87Q9NVE4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC87Q9NVE4 Y_RNA.439-201ENST00000384119 94 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 RNU6-708P-201ENST00000384217 107 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 MIR548H3-201ENST00000408771 118 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 RNU6-130P-201ENST00000411112 103 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 RNU6-1245P-201ENST00000411130 106 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 DBIP2-201ENST00000419076 262 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AC004552.1-201ENST00000419089 348 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AC005300.1-201ENST00000428401 373 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 snoU13.30-201ENST00000458951 104 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 RNU7-87P-201ENST00000459343 62 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 RPS26P3-201ENST00000470205 348 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AC090543.2-201ENST00000483963 348 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AC004057.1-201ENST00000485827 348 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 VWA8P1-201ENST00000510889 176 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 RNU6-570P-201ENST00000517051 105 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 CASP1P1-201ENST00000526345 212 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AC012493.2-201ENST00000595083 291 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AL137843.1-201ENST00000605078 385 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 AL356157.2-201ENST00000605122 111 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 MIR7851-201ENST00000610611 160 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 SDR42E1P4-201ENST00000620894 481 ntBASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC87Q9NVE4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms