Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 BNIP3P30-201ENST00000601184 574 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 YWHAEP7-203ENST00000622054 312 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC091931.1-201ENST00000623488 728 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC093648.1-201ENST00000623546 606 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 AC008555.8-201ENST00000623602 2168 ntBASIC1.58□□□□□ -2.16
EXOSC4Q9NPD3 SNORD114-19-201ENST00000363072 75 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-529P-201ENST00000363383 104 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 SNORD116-20-201ENST00000384529 92 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-297P-201ENST00000384636 107 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 Y_RNA.576-201ENST00000384781 102 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 SNORD56-201ENST00000413522 71 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 UBE2V1P10-201ENST00000414685 269 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 MTND2P18-201ENST00000419962 1030 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 HSPE1P21-201ENST00000438283 308 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC073614.1-201ENST00000438690 650 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 GAPDHP17-201ENST00000449858 1001 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 CYP2C59P-201ENST00000457790 269 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC010486.2-201ENST00000505572 483 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC116562.3-201ENST00000506136 177 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 Vault.3-201ENST00000516676 95 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC090572.1-201ENST00000519251 160 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC068587.5-201ENST00000528506 175 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 RANP3-201ENST00000530970 276 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 OR5AL2P-201ENST00000532185 920 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC012414.6-201ENST00000568241 401 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 RPL30P11-203ENST00000598995 310 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC243960.4-201ENST00000600532 288 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC087241.4-201ENST00000612441 480 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AL773524.1-201ENST00000614065 229 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.57□□□□□ -2.16
EXOSC4Q9NPD3 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-116P-201ENST00000384042 109 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-843P-201ENST00000384454 104 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 SNORA26.8-201ENST00000391306 124 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AL079342.1-201ENST00000401460 267 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 RNU2-8P-201ENST00000410727 190 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 HMGN1P14-201ENST00000412459 517 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 RPS20P15-201ENST00000412792 311 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 C1DP2-201ENST00000418167 426 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AL158823.1-201ENST00000418441 478 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 RPL31P35-201ENST00000431058 377 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 DNAJC19P4-201ENST00000440115 345 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 MTND2P4-201ENST00000445034 1004 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 HMGB1P30-201ENST00000492455 606 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC104806.1-201ENST00000508720 308 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 MTND3P25-201ENST00000509243 135 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 BNIP3P6-201ENST00000549284 499 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC087883.1-201ENST00000551882 391 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC136619.2-201ENST00000563361 631 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC137800.2-201ENST00000574375 120 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AL138889.2-201ENST00000603883 242 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC005034.5-201ENST00000604219 466 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 AC021646.1-201ENST00000605469 484 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-91P-201ENST00000607774 107 ntBASIC1.56□□□□□ -2.16
EXOSC4Q9NPD3 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 RNU6-179P-201ENST00000363350 107 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 SNORD115-7-201ENST00000365306 82 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 BX295541.1-201ENST00000417774 250 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC009961.2-201ENST00000435771 251 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 IFNA20P-201ENST00000436840 528 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC012308.1-201ENST00000451232 178 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AL033528.1-201ENST00000453780 140 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 SNRPGP9-201ENST00000456025 225 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 TRBV12-1-201ENST00000479785 344 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AP001025.1-201ENST00000486139 332 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 MTND1P22-201ENST00000510572 951 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC091965.2-201ENST00000512324 613 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 SNORA31.23-201ENST00000517219 133 ntBASIC1.55□□□□□ -2.16
EXOSC4Q9NPD3 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms