Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC107222.1-201ENST00000510899 637 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 HSPE1P18-201ENST00000517602 280 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AP000867.2-201ENST00000532468 320 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 ADI1P3-201ENST00000549509 470 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC078814.3-201ENST00000553036 491 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 AL121579.1-201ENST00000555129 305 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AL670379.4-201ENST00000605279 254 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 RNU6-89P-201ENST00000606519 100 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 MIR6873-201ENST00000622788 63 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC090617.10-201ENST00000624308 134 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 Z99571.1-201ENST00000636677 394 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.58□□□□□ -2
UPF3AQ9H1J1 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.58□□□□□ -2
UPF3AQ9H1J1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 Y_RNA.86-201ENST00000363020 111 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 SNORA72.1-201ENST00000363485 129 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 RNU6-371P-201ENST00000364283 108 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 Y_RNA.231-201ENST00000364358 102 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
UPF3AQ9H1J1 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 SNORA16.2-201ENST00000390991 127 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 RNU6-1197P-201ENST00000391183 107 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 RNU6-876P-201ENST00000391295 104 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 RNU4-46P-201ENST00000410818 138 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC007919.1-201ENST00000429380 217 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC092573.2-201ENST00000434546 243 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 PIGFP3-201ENST00000441918 722 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC009237.8-201ENST00000445492 379 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC133134.1-201ENST00000466800 359 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AP000852.1-201ENST00000472460 573 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 Y_RNA.665-201ENST00000516177 98 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.57□□□□□ -2
UPF3AQ9H1J1 AL137161.1-201ENST00000532231 390 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC023050.3-201ENST00000541142 333 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 TRAV28-201ENST00000557548 323 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC021646.1-201ENST00000605469 484 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 DUSP12P1-201ENST00000612874 516 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AL359547.2-201ENST00000615810 418 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC010297.1-201ENST00000623948 149 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 AC007785.2-201ENST00000598627 1916 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 MTND4P14-201ENST00000435799 1354 ntBASIC2.57□□□□□ -2
UPF3AQ9H1J1 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
UPF3AQ9H1J1 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
UPF3AQ9H1J1 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
UPF3AQ9H1J1 Y_RNA.279-201ENST00000364763 95 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 Y_RNA.378-201ENST00000365652 113 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 MIR578-201ENST00000384828 96 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 AL606923.1-201ENST00000406616 190 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 MIR1290-201ENST00000408735 78 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 Z98742.2-201ENST00000431564 187 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 AL360271.2-201ENST00000447710 161 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 SNRPFP3-201ENST00000457792 225 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 SCARNA18-201ENST00000459004 134 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 RNU6-953P-201ENST00000459154 107 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 AC112206.3-201ENST00000514578 389 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 RN7SKP40-201ENST00000517211 242 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 AC008739.2-201ENST00000597006 317 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 uc_338.34-201ENST00000617467 174 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 uc_338.11-201ENST00000619132 160 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 AP003400.5-201ENST00000624827 617 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 MTND4P35-201ENST00000604257 1375 ntBASIC2.56□□□□□ -2
UPF3AQ9H1J1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
UPF3AQ9H1J1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
UPF3AQ9H1J1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
UPF3AQ9H1J1 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
UPF3AQ9H1J1 Y_RNA.160-201ENST00000363677 92 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 RNU6-270P-201ENST00000364131 105 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 RNU6-867P-201ENST00000364956 107 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 RNU4-66P-201ENST00000365199 138 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 RNU6-715P-201ENST00000365204 103 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 RNU6-741P-201ENST00000383889 107 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 SNORA64-201ENST00000384674 134 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 MIR627-201ENST00000384979 97 ntBASIC2.55□□□□□ -2
UPF3AQ9H1J1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms