Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.88□□□□□ -2.11
SCN2AQ99250 SNORD3E-201ENST00000362899 217 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 RNU6-1159P-201ENST00000362933 107 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 RNU6-179P-201ENST00000363350 107 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 RNU6-270P-201ENST00000364131 105 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 SNORA62.1-201ENST00000364287 154 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 RNU5A-6P-201ENST00000384136 116 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 Y_RNA.481-201ENST00000384373 102 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 RNU6-297P-201ENST00000384636 107 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN2AQ99250 BX295541.1-201ENST00000417774 250 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN2AQ99250 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
SCN2AQ99250 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN2AQ99250 RPL36AP48-201ENST00000485521 314 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC139453.3-201ENST00000493276 369 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN2AQ99250 AP001893.2-201ENST00000526949 202 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN2AQ99250 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.87□□□□□ -2.11
SCN2AQ99250 AC136619.2-201ENST00000563361 631 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 MIR5571-201ENST00000577998 113 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC008521.1-201ENST00000587471 187 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC008536.2-201ENST00000607284 349 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC007792.1-201ENST00000623023 402 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 AC005609.4-201ENST00000625071 447 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SCN2AQ99250 ZNF72P-201ENST00000425869 1908 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.87□□□□□ -2.11
SCN2AQ99250 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.87□□□□□ -2.11
SCN2AQ99250 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC004520.1-201ENST00000608362 1413 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU6-1119P-201ENST00000384349 108 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 MIR9-3-201ENST00000385084 90 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU6-482P-201ENST00000391068 107 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU2-36P-201ENST00000410361 191 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 VN1R108P-201ENST00000431580 830 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN2AQ99250 AC003071.1-201ENST00000451219 789 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC233279.1-201ENST00000455300 423 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 SNRPFP3-201ENST00000457792 225 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU7-182P-201ENST00000459009 62 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 DYNLL1P5-201ENST00000467158 270 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.86□□□□□ -2.11
SCN2AQ99250 HMGB1P29-201ENST00000505659 499 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC113155.1-201ENST00000511141 769 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RN7SKP298-201ENST00000515950 94 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU6-1183P-201ENST00000517054 60 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.86□□□□□ -2.11
SCN2AQ99250 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.86□□□□□ -2.11
SCN2AQ99250 AC104383.1-201ENST00000530297 370 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.86□□□□□ -2.11
SCN2AQ99250 AC015712.3-201ENST00000559380 164 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 MIR4765-201ENST00000585007 77 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC087683.1-201ENST00000591187 441 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.86□□□□□ -2.11
SCN2AQ99250 AL162413.1-201ENST00000603198 110 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AL713866.2-201ENST00000603579 219 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AL136363.2-201ENST00000604173 851 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SCN2AQ99250 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN2AQ99250 HAUS6P2-201ENST00000433254 2404 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
SCN2AQ99250 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
SCN2AQ99250 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SCN2AQ99250 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU6-529P-201ENST00000363383 104 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU6-82P-201ENST00000363970 107 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RNA5SP125-201ENST00000364843 120 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 Y_RNA.381-201ENST00000365666 102 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 Y_RNA.402-201ENST00000383972 102 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 RNU6-658P-201ENST00000384606 106 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 MIR144-201ENST00000384886 86 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 MTATP6P18-201ENST00000417994 673 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 SKA2P1-201ENST00000425592 390 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 GTF2IP20-201ENST00000431663 360 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC004383.1-201ENST00000438135 289 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 NDUFB1P2-201ENST00000449477 176 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.86□□□□□ -2.11
SCN2AQ99250 AC074344.1-201ENST00000512823 224 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.86□□□□□ -2.11
SCN2AQ99250 GNAI2P1-201ENST00000541815 315 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.86□□□□□ -2.11
SCN2AQ99250 Z99129.1-201ENST00000612510 255 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AL589743.7-201ENST00000612637 233 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 AL157786.1-207ENST00000627771 695 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.86□□□□□ -2.11
SCN2AQ99250 OR5AK4P-201ENST00000635912 903 ntBASIC1.86□□□□□ -2.11
SCN2AQ99250 MTND5P26-201ENST00000426018 1752 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 AC093536.2-201ENST00000565257 1406 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 RNU6-1287P-201ENST00000362914 107 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 SNORD14B-201ENST00000364533 90 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 SNORA68.1-201ENST00000364537 132 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 RNU6-1060P-201ENST00000384664 107 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 CIR1P3-201ENST00000405137 479 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 RNU2-29P-201ENST00000410423 189 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 RNA5SP338-201ENST00000410495 85 ntBASIC1.85□□□□□ -2.11
SCN2AQ99250 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.85□□□□□ -2.11
SCN2AQ99250 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms