Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RNU6-301P-201ENST00000384277 107 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 CDK8P2-201ENST00000415020 547 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 RPL21P90-201ENST00000415692 466 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AC138623.1-201ENST00000418060 216 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AL139413.1-201ENST00000421309 217 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 PIGFP2-201ENST00000421400 651 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AC133104.1-201ENST00000429100 218 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 WARS2P1-201ENST00000429678 537 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 HIGD1AP2-201ENST00000446367 280 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AC012308.1-201ENST00000451232 178 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 C1DP4-201ENST00000455429 424 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS39Q96JC1 RPL23AP49-201ENST00000492925 468 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS39Q96JC1 RNU6-410P-201ENST00000517006 107 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS39Q96JC1 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
VPS39Q96JC1 MIR4775-201ENST00000581168 75 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 MIR5002-201ENST00000584713 97 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS39Q96JC1 RPL30P11-203ENST00000598995 310 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AL109918.3-201ENST00000603072 338 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AC025449.1-201ENST00000603896 529 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AL022154.1-201ENST00000604698 785 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS39Q96JC1 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
VPS39Q96JC1 IGHVIII-44-202ENST00000636235 289 ntBASIC2.16□□□□□ -2.06
VPS39Q96JC1 RNU4-82P-201ENST00000362443 140 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 Y_RNA.159-201ENST00000363674 87 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 RNU6-384P-201ENST00000364900 104 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 RNU1-57P-201ENST00000384491 166 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 RNU6-1179P-201ENST00000384667 107 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AL591034.2-201ENST00000402839 359 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC096920.1-201ENST00000423991 241 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 USP9YP14-201ENST00000430663 563 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 MTCO3P5-201ENST00000433620 714 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 MTATP6P26-201ENST00000445926 662 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC132479.1-201ENST00000449160 144 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
VPS39Q96JC1 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC006512.1-201ENST00000468816 291 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 MED28P2-201ENST00000475771 317 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC018868.1-201ENST00000491307 315 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 HMGB1P35-201ENST00000503360 598 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 MTCO3P9-201ENST00000506989 781 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 RNU1-86P-201ENST00000516108 154 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 RNU1-107P-201ENST00000516617 154 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 RNU6-685P-201ENST00000517088 95 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AP002770.2-201ENST00000543613 532 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 SUB1P2-201ENST00000556401 297 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC092325.1-201ENST00000566449 554 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 MIR3611-201ENST00000584484 83 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC073539.2-201ENST00000597113 165 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC073410.2-201ENST00000603240 332 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 MIR3529-201ENST00000637713 78 ntBASIC2.15□□□□□ -2.07
VPS39Q96JC1 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS39Q96JC1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
VPS39Q96JC1 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
VPS39Q96JC1 MIR449A-201ENST00000362113 91 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 RNA5SP276-201ENST00000362580 94 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 RNU6-108P-201ENST00000365558 107 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 BTF3P7-201ENST00000407097 488 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 RNU4-53P-201ENST00000410828 140 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
VPS39Q96JC1 PGBD4P6-201ENST00000421501 610 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 AL353689.1-201ENST00000438895 199 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AL118520.1-201ENST00000450770 291 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 RPL23AP3-201ENST00000453844 468 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC090255.1-201ENST00000495779 349 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC092436.1-201ENST00000506450 503 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 MTND3P25-201ENST00000509243 135 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 MRPS17P9-201ENST00000511924 393 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 SCARNA16.3-201ENST00000516595 184 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 RNU1-40P-201ENST00000516816 164 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 RNU1-97P-201ENST00000516872 164 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 MTCO2P4-201ENST00000517968 247 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 AP002963.1-201ENST00000530590 184 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AP000889.1-201ENST00000530968 660 ntBASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.14□□□□□ -2.07
VPS39Q96JC1 NDUFA5P6-201ENST00000542110 379 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 146 ms