Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNA5SP165-201ENST00000517142 115 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 AC023538.1-201ENST00000534576 736 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 AC103810.8-201ENST00000607347 118 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 AL109620.1-201ENST00000618738 1197 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 MIR6513-201ENST00000621188 64 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 MIR924-201ENST00000638017 53 ntBASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.08□□□□□ -2.24
CCDC88AQ3V6T2 Y_RNA.115-201ENST00000363272 98 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-289P-201ENST00000364093 107 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-188P-201ENST00000364207 107 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 Y_RNA.255-201ENST00000364581 97 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-744P-201ENST00000365557 107 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-1316P-201ENST00000384242 108 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 MIR518A2-201ENST00000384966 87 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 NCOR1P3-201ENST00000420479 303 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RPL23AP35-201ENST00000451906 501 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC079598.5-201ENST00000547460 117 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC009712.1-201ENST00000564938 316 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC060771.1-201ENST00000582031 164 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC068620.3-201ENST00000602749 560 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 MIR6134-201ENST00000617606 109 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 Y_RNA.258-201ENST00000364613 105 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-160P-201ENST00000384591 107 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 MIR19A-201ENST00000384878 82 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 OR6C66P-201ENST00000414917 930 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC083875.1-201ENST00000419509 405 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL358176.2-201ENST00000425769 204 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL627311.1-201ENST00000431514 115 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL354941.1-201ENST00000438600 464 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-143P-201ENST00000516942 93 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL022154.1-201ENST00000604698 785 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AL078604.3-201ENST00000615580 211 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 MIR6835-201ENST00000621552 64 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC007490.1-201ENST00000624321 703 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AC022513.1-201ENST00000624512 117 ntBASIC1.07□□□□□ -2.24
CCDC88AQ3V6T2 AP000776.1-201ENST00000530032 1663 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 RN7SKP266-201ENST00000410232 287 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AL359704.1-201ENST00000411586 781 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AC079448.1-201ENST00000449377 373 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AL590365.1-201ENST00000450788 243 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 OR6C5P-201ENST00000452388 923 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 ACA59.2-201ENST00000517061 156 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AL160236.1-201ENST00000556317 195 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 BNIP3P26-201ENST00000600827 554 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AL355598.1-201ENST00000604169 202 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AC018638.7-201ENST00000605836 1114 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 AC034229.4-201ENST00000607861 441 ntBASIC1.06□□□□□ -2.24
CCDC88AQ3V6T2 Y_RNA.234-201ENST00000364409 97 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 RNU6-658P-201ENST00000384606 106 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 RPL30P13-201ENST00000418873 348 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 UBE2V1P4-201ENST00000425374 344 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 snoU13.14-201ENST00000459372 104 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 MTCO2P15-201ENST00000532655 656 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 CYP2C61P-201ENST00000604072 290 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC107952.2-201ENST00000606048 486 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AL132822.1-201ENST00000617063 513 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 MTND5P9-201ENST00000503854 1755 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AL359634.1-202ENST00000404721 284 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 MIR1262-201ENST00000408276 93 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 RPL21P90-201ENST00000415692 466 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 CBX3P6-201ENST00000430257 527 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 CYCSP27-201ENST00000527643 293 ntBASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.05□□□□□ -2.24
CCDC88AQ3V6T2 AC093249.1-201ENST00000567049 203 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms