Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.98□□□□□ -2.09
MSH6P52701 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.98□□□□□ -2.09
MSH6P52701 EPS15P1-201ENST00000448836 336 ntBASIC1.98□□□□□ -2.09
MSH6P52701 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.98□□□□□ -2.09
MSH6P52701 RNU6-572P-201ENST00000516724 80 ntBASIC1.98□□□□□ -2.09
MSH6P52701 RNU6-914P-201ENST00000516749 109 ntBASIC1.98□□□□□ -2.09
MSH6P52701 RNU6-677P-201ENST00000516914 101 ntBASIC1.98□□□□□ -2.09
MSH6P52701 RNA5SP337-201ENST00000517007 109 ntBASIC1.98□□□□□ -2.09
MSH6P52701 SNORA31.23-201ENST00000517219 133 ntBASIC1.98□□□□□ -2.09
MSH6P52701 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC1.98□□□□□ -2.09
MSH6P52701 MIR3122-201ENST00000577243 73 ntBASIC1.98□□□□□ -2.09
MSH6P52701 MIR4782-201ENST00000577987 79 ntBASIC1.98□□□□□ -2.09
MSH6P52701 MIR1273C-201ENST00000578669 77 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.98□□□□□ -2.09
MSH6P52701 FAM106DP-201ENST00000586416 501 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC093424.1-201ENST00000604999 338 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC080078.3-201ENST00000605407 463 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC018638.7-201ENST00000605836 1114 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AP002360.4-201ENST00000606980 481 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC004223.4-201ENST00000612426 332 ntBASIC1.98□□□□□ -2.09
MSH6P52701 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
MSH6P52701 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.98□□□□□ -2.09
MSH6P52701 MTND5P30-201ENST00000452896 1731 ntBASIC1.98□□□□□ -2.09
MSH6P52701 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
MSH6P52701 MIR218-1-201ENST00000384999 110 ntBASIC1.98□□□□□ -2.09
MSH6P52701 MIR518D-201ENST00000385014 87 ntBASIC1.98□□□□□ -2.09
MSH6P52701 U6atac.2-201ENST00000408644 118 ntBASIC1.98□□□□□ -2.09
MSH6P52701 KATNBL1P3-201ENST00000443475 909 ntBASIC1.98□□□□□ -2.09
MSH6P52701 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.98□□□□□ -2.09
MSH6P52701 AC116655.1-201ENST00000508324 901 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.98□□□□□ -2.09
MSH6P52701 Y_RNA.689-201ENST00000516589 107 ntBASIC1.98□□□□□ -2.09
MSH6P52701 RNU6-1315P-201ENST00000517187 99 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AP003122.4-201ENST00000530980 758 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.98□□□□□ -2.09
MSH6P52701 ZNF321P-202ENST00000550843 495 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC090616.2-202ENST00000584248 222 ntBASIC1.98□□□□□ -2.09
MSH6P52701 MIR4765-201ENST00000585007 77 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.98□□□□□ -2.09
MSH6P52701 CLPTM1LP1-201ENST00000604519 484 ntBASIC1.98□□□□□ -2.09
MSH6P52701 AC024581.2-201ENST00000619986 252 ntBASIC1.98□□□□□ -2.09
MSH6P52701 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
MSH6P52701 AL359854.1-201ENST00000614203 1594 ntBASIC1.97□□□□□ -2.09
MSH6P52701 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
MSH6P52701 SNORD56.2-201ENST00000363242 71 ntBASIC1.97□□□□□ -2.09
MSH6P52701 RNU5E-5P-201ENST00000365379 116 ntBASIC1.97□□□□□ -2.09
MSH6P52701 SNORA40C-201ENST00000391285 128 ntBASIC1.97□□□□□ -2.09
MSH6P52701 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.97□□□□□ -2.09
MSH6P52701 Z99497.1-201ENST00000421282 135 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC137499.1-201ENST00000427602 88 ntBASIC1.97□□□□□ -2.09
MSH6P52701 RPL30P4-201ENST00000429309 333 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.97□□□□□ -2.09
MSH6P52701 AC092001.1-201ENST00000453012 261 ntBASIC1.97□□□□□ -2.09
MSH6P52701 ZNF114P1-201ENST00000453500 292 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.97□□□□□ -2.09
MSH6P52701 MTCO2P29-201ENST00000465212 189 ntBASIC1.97□□□□□ -2.09
MSH6P52701 COX6CP14-201ENST00000469580 174 ntBASIC1.97□□□□□ -2.09
MSH6P52701 RPL30P6-201ENST00000475925 342 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AP000797.1-201ENST00000478870 387 ntBASIC1.97□□□□□ -2.09
MSH6P52701 RPS3AP22-201ENST00000488297 769 ntBASIC1.97□□□□□ -2.09
MSH6P52701 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC010587.1-201ENST00000505809 469 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC005178.1-201ENST00000508392 440 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.97□□□□□ -2.09
MSH6P52701 AC022878.1-201ENST00000530684 149 ntBASIC1.97□□□□□ -2.09
MSH6P52701 CYCSP26-201ENST00000534107 320 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.97□□□□□ -2.09
MSH6P52701 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.97□□□□□ -2.09
MSH6P52701 AC012435.1-202ENST00000568772 240 ntBASIC1.97□□□□□ -2.09
MSH6P52701 MIR15A-201ENST00000607334 83 ntBASIC1.97□□□□□ -2.09
MSH6P52701 AC126118.1-201ENST00000607744 628 ntBASIC1.97□□□□□ -2.09
MSH6P52701 U8.1-201ENST00000362843 134 ntBASIC1.96□□□□□ -2.1
MSH6P52701 SNORA3A-201ENST00000364113 130 ntBASIC1.96□□□□□ -2.1
MSH6P52701 RNU6-1280P-201ENST00000365211 107 ntBASIC1.96□□□□□ -2.1
MSH6P52701 RNU5A-2P-201ENST00000384337 116 ntBASIC1.96□□□□□ -2.1
MSH6P52701 RNU6-748P-201ENST00000384648 107 ntBASIC1.96□□□□□ -2.1
MSH6P52701 MIR1304-201ENST00000408243 91 ntBASIC1.96□□□□□ -2.1
MSH6P52701 AL356379.1-201ENST00000414105 126 ntBASIC1.96□□□□□ -2.1
MSH6P52701 AC092809.3-201ENST00000415453 231 ntBASIC1.96□□□□□ -2.1
MSH6P52701 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.96□□□□□ -2.1
MSH6P52701 AL589872.1-201ENST00000426602 288 ntBASIC1.96□□□□□ -2.1
MSH6P52701 GPM6BP3-201ENST00000442797 145 ntBASIC1.96□□□□□ -2.1
MSH6P52701 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.96□□□□□ -2.1
MSH6P52701 AP001324.2-201ENST00000461163 319 ntBASIC1.96□□□□□ -2.1
MSH6P52701 RNU7-51P-201ENST00000516560 62 ntBASIC1.96□□□□□ -2.1
MSH6P52701 SNORA31.19-201ENST00000517079 126 ntBASIC1.96□□□□□ -2.1
MSH6P52701 SNORD14A-201ENST00000606526 91 ntBASIC1.96□□□□□ -2.1
MSH6P52701 AC069294.1-201ENST00000608397 350 ntBASIC1.96□□□□□ -2.1
MSH6P52701 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.96□□□□□ -2.1
MSH6P52701 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.96□□□□□ -2.1
MSH6P52701 AC073343.1-201ENST00000328239 651 ntBASIC1.95□□□□□ -2.1
MSH6P52701 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.95□□□□□ -2.1
MSH6P52701 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.95□□□□□ -2.1
MSH6P52701 RNU6-166P-201ENST00000384371 107 ntBASIC1.95□□□□□ -2.1
MSH6P52701 MIR147B-201ENST00000390185 80 ntBASIC1.95□□□□□ -2.1
MSH6P52701 RNU6-1025P-201ENST00000410629 104 ntBASIC1.95□□□□□ -2.1
MSH6P52701 MTND4P20-201ENST00000424125 869 ntBASIC1.95□□□□□ -2.1
MSH6P52701 RPS3AP44-201ENST00000425466 790 ntBASIC1.95□□□□□ -2.1
MSH6P52701 AL356583.2-201ENST00000426536 280 ntBASIC1.95□□□□□ -2.1
MSH6P52701 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms