Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNA5SP479-201ENST00000364858 117 ntBASIC4.18□□□□□ -1.74
LIG3P49916 MIR32-201ENST00000384965 70 ntBASIC4.18□□□□□ -1.74
LIG3P49916 AC099548.1-201ENST00000421443 426 ntBASIC4.18□□□□□ -1.74
LIG3P49916 RPL23AP95-201ENST00000426806 265 ntBASIC4.18□□□□□ -1.74
LIG3P49916 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.18□□□□□ -1.74
LIG3P49916 HMGN2P16-201ENST00000456802 261 ntBASIC4.18□□□□□ -1.74
LIG3P49916 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.18□□□□□ -1.74
LIG3P49916 AC087477.1-201ENST00000465747 340 ntBASIC4.18□□□□□ -1.74
LIG3P49916 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.18□□□□□ -1.74
LIG3P49916 HMGB1P35-201ENST00000503360 598 ntBASIC4.18□□□□□ -1.74
LIG3P49916 AC006445.2-201ENST00000510061 472 ntBASIC4.18□□□□□ -1.74
LIG3P49916 AC091874.1-201ENST00000511402 339 ntBASIC4.18□□□□□ -1.74
LIG3P49916 Y_RNA.673-201ENST00000516306 88 ntBASIC4.18□□□□□ -1.74
LIG3P49916 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.18□□□□□ -1.74
LIG3P49916 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC4.18□□□□□ -1.74
LIG3P49916 AC022655.2-201ENST00000577280 318 ntBASIC4.18□□□□□ -1.74
LIG3P49916 MIR4300-201ENST00000581016 96 ntBASIC4.18□□□□□ -1.74
LIG3P49916 AC012433.1-201ENST00000588916 398 ntBASIC4.18□□□□□ -1.74
LIG3P49916 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.18□□□□□ -1.74
LIG3P49916 AC244505.7-201ENST00000599675 272 ntBASIC4.18□□□□□ -1.74
LIG3P49916 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.18□□□□□ -1.74
LIG3P49916 AC112484.5-201ENST00000624189 228 ntBASIC4.18□□□□□ -1.74
LIG3P49916 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LIG3P49916 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
LIG3P49916 ADAM3A-203ENST00000461344 2157 ntBASIC4.17□□□□□ -1.74
LIG3P49916 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
LIG3P49916 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
LIG3P49916 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIG3P49916 RNU6-843P-201ENST00000384454 104 ntBASIC4.17□□□□□ -1.74
LIG3P49916 RNU1-13P-201ENST00000384499 162 ntBASIC4.17□□□□□ -1.74
LIG3P49916 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
LIG3P49916 SNORD115-46-201ENST00000390982 71 ntBASIC4.17□□□□□ -1.74
LIG3P49916 RPS4XP3-201ENST00000398541 413 ntBASIC4.17□□□□□ -1.74
LIG3P49916 UBA52P6-201ENST00000399822 382 ntBASIC4.17□□□□□ -1.74
LIG3P49916 RN7SKP53-201ENST00000411337 315 ntBASIC4.17□□□□□ -1.74
LIG3P49916 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.17□□□□□ -1.74
LIG3P49916 AC007969.2-201ENST00000441891 191 ntBASIC4.17□□□□□ -1.74
LIG3P49916 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.17□□□□□ -1.74
LIG3P49916 HMGN2P10-201ENST00000448085 265 ntBASIC4.17□□□□□ -1.74
LIG3P49916 AC012308.1-201ENST00000451232 178 ntBASIC4.17□□□□□ -1.74
LIG3P49916 SNRPGP5-201ENST00000456003 220 ntBASIC4.17□□□□□ -1.74
LIG3P49916 RNA5SP246-201ENST00000458909 119 ntBASIC4.17□□□□□ -1.74
LIG3P49916 PPIAP15-201ENST00000479662 484 ntBASIC4.17□□□□□ -1.74
LIG3P49916 RPS29P20-201ENST00000489592 171 ntBASIC4.17□□□□□ -1.74
LIG3P49916 AF186996.7-201ENST00000492781 209 ntBASIC4.17□□□□□ -1.74
LIG3P49916 SNORA31.6-201ENST00000516241 130 ntBASIC4.17□□□□□ -1.74
LIG3P49916 RNU6-1012P-201ENST00000516606 109 ntBASIC4.17□□□□□ -1.74
LIG3P49916 MIR2116-201ENST00000517221 80 ntBASIC4.17□□□□□ -1.74
LIG3P49916 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.17□□□□□ -1.74
LIG3P49916 MIR3160-1-201ENST00000577972 85 ntBASIC4.17□□□□□ -1.74
LIG3P49916 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.17□□□□□ -1.74
LIG3P49916 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.17□□□□□ -1.74
LIG3P49916 uc_338.32-201ENST00000615087 172 ntBASIC4.17□□□□□ -1.74
LIG3P49916 AC240442.1-201ENST00000616055 283 ntBASIC4.17□□□□□ -1.74
LIG3P49916 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.17□□□□□ -1.74
LIG3P49916 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
LIG3P49916 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
LIG3P49916 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
LIG3P49916 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIG3P49916 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.17□□□□□ -1.74
LIG3P49916 ZNF826P-207ENST00000622273 1910 ntBASIC4.17□□□□□ -1.74
LIG3P49916 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIG3P49916 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
LIG3P49916 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
LIG3P49916 SPRR2C-201ENST00000290702 219 ntBASIC4.16□□□□□ -1.74
LIG3P49916 RNU6-270P-201ENST00000364131 105 ntBASIC4.16□□□□□ -1.74
LIG3P49916 RNA5SP130-201ENST00000364431 114 ntBASIC4.16□□□□□ -1.74
LIG3P49916 SNORA29-201ENST00000384183 140 ntBASIC4.16□□□□□ -1.74
LIG3P49916 MIR1193-201ENST00000408109 78 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.16□□□□□ -1.74
LIG3P49916 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.16□□□□□ -1.74
LIG3P49916 AL356095.1-201ENST00000417217 199 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.16□□□□□ -1.74
LIG3P49916 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.16□□□□□ -1.74
LIG3P49916 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.16□□□□□ -1.74
LIG3P49916 MED28P2-201ENST00000475771 317 ntBASIC4.16□□□□□ -1.74
LIG3P49916 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.16□□□□□ -1.74
LIG3P49916 RNU6-1231P-201ENST00000517185 103 ntBASIC4.16□□□□□ -1.74
LIG3P49916 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
LIG3P49916 HIGD1AP1-201ENST00000550979 275 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AC007375.1-201ENST00000554513 578 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.16□□□□□ -1.74
LIG3P49916 AL391261.3-201ENST00000557194 520 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.16□□□□□ -1.74
LIG3P49916 AC136932.1-201ENST00000574771 208 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AC009163.5-201ENST00000575421 637 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.16□□□□□ -1.74
LIG3P49916 MIR6867-201ENST00000610636 67 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AP001282.2-201ENST00000616149 309 ntBASIC4.16□□□□□ -1.74
LIG3P49916 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.16□□□□□ -1.74
LIG3P49916 AC137590.2-201ENST00000619709 240 ntBASIC4.16□□□□□ -1.74
LIG3P49916 AC048347.1-201ENST00000624621 427 ntBASIC4.16□□□□□ -1.74
LIG3P49916 RNA5SP196-201ENST00000625967 102 ntBASIC4.16□□□□□ -1.74
LIG3P49916 MIR3529-201ENST00000637713 78 ntBASIC4.16□□□□□ -1.74
LIG3P49916 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
LIG3P49916 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
LIG3P49916 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.16□□□□□ -1.74
LIG3P49916 AP001486.2-201ENST00000561652 5113 ntBASIC4.16□□□□□ -1.74
LIG3P49916 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
LIG3P49916 AC110491.1-201ENST00000562191 2010 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms