Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
TNFRSF4P43489 MIR21-201ENST00000362134 72 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
TNFRSF4P43489 RNU6-116P-201ENST00000384042 109 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 RNU6-1029P-201ENST00000384109 107 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 Y_RNA.516-201ENST00000384541 124 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL079342.1-201ENST00000401460 267 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL133475.1-201ENST00000404414 305 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 EEF1A1P40-201ENST00000412883 573 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 RPL21P90-201ENST00000415692 466 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL353621.1-201ENST00000418219 243 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL353193.1-201ENST00000421444 268 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 RPL7P12-201ENST00000446719 750 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 PSPHP1-201ENST00000450062 261 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 snoU13.23-201ENST00000458863 104 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AC112771.1-201ENST00000463581 102 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AC133134.1-201ENST00000466800 359 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 MED28P2-201ENST00000475771 317 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AC018437.1-201ENST00000492214 406 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 SNORA25.11-201ENST00000515935 105 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 MIR892C-201ENST00000516410 77 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 RNU5B-3P-201ENST00000516601 115 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AP004607.1-201ENST00000524456 203 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AP001893.2-201ENST00000526949 202 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 AC010378.1-201ENST00000619270 362 ntBASIC2.3□□□□□ -2.04
TNFRSF4P43489 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
TNFRSF4P43489 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
TNFRSF4P43489 HSPA8P4-201ENST00000511877 1920 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC027514.1-201ENST00000588561 1603 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 RNU6-1085P-201ENST00000363576 107 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 RNU6-72P-201ENST00000384285 79 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 RNU6-606P-201ENST00000384721 111 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 RNU6-192P-201ENST00000391253 100 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 CALM2P3-201ENST00000400429 449 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 RNA5SP344-201ENST00000411081 104 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 OR6C66P-201ENST00000414917 930 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 RPS3AP44-201ENST00000425466 790 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 MTND1P18-201ENST00000448191 573 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 snoU109.2-201ENST00000459316 135 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 SMURF2P1-201ENST00000514992 481 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC079598.5-201ENST00000547460 117 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 DEFB122-202ENST00000569013 197 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 MIR4769-201ENST00000584126 77 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC060766.3-201ENST00000591442 263 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC096772.1-201ENST00000609146 564 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC122108.2-201ENST00000611946 526 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC024581.2-201ENST00000619986 252 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AL359880.1-201ENST00000621879 266 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 MIR6766-201ENST00000622641 72 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 AC011155.2-201ENST00000623202 216 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 SCARNA4-202ENST00000625402 129 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 MIR219B-201ENST00000637023 88 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 MIR3529-201ENST00000637713 78 ntBASIC2.29□□□□□ -2.04
TNFRSF4P43489 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.29□□□□□ -2.04
TNFRSF4P43489 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
TNFRSF4P43489 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 Y_RNA.372-201ENST00000365599 102 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 MIR221-201ENST00000385135 110 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 CYCSP48-201ENST00000417124 323 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC003685.2-201ENST00000422795 395 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 RPL7P54-201ENST00000438336 674 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AL360271.2-201ENST00000447710 161 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC006026.2-201ENST00000457376 180 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC009646.1-201ENST00000510455 318 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 RNA5SP76-201ENST00000516277 87 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 RNA5SP200-201ENST00000516360 103 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 MIR4775-201ENST00000581168 75 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC008752.3-201ENST00000588113 712 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AF250324.2-201ENST00000608299 610 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.28□□□□□ -2.04
TNFRSF4P43489 AP001486.3-201ENST00000615334 372 ntBASIC2.28□□□□□ -2.04
TNFRSF4P43489 AC068792.1-201ENST00000621354 417 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 191.2 ms