Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC112771.1-201ENST00000463581 102 ntBASIC0.25□□□□□ -2.37
CUX1P39880 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.25□□□□□ -2.37
CUX1P39880 PTP4A1P4-201ENST00000512479 322 ntBASIC0.25□□□□□ -2.37
CUX1P39880 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.25□□□□□ -2.37
CUX1P39880 CLIC4P2-201ENST00000601934 717 ntBASIC0.25□□□□□ -2.37
CUX1P39880 AP000860.1-201ENST00000605250 559 ntBASIC0.25□□□□□ -2.37
CUX1P39880 AC016252.1-201ENST00000609721 474 ntBASIC0.25□□□□□ -2.37
CUX1P39880 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.25□□□□□ -2.37
CUX1P39880 AC017037.3-201ENST00000625016 472 ntBASIC0.25□□□□□ -2.37
CUX1P39880 MIR19B1-201ENST00000384829 87 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AL161935.2-201ENST00000414627 60 ntBASIC0.24□□□□□ -2.37
CUX1P39880 ZNF92P1Y-201ENST00000415010 1191 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC0.24□□□□□ -2.37
CUX1P39880 AL441985.1-201ENST00000457727 251 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.24□□□□□ -2.37
CUX1P39880 AC022616.8-201ENST00000533569 253 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC0.24□□□□□ -2.37
CUX1P39880 ROCK1P1-201ENST00000573767 549 ntBASIC0.24□□□□□ -2.37
CUX1P39880 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
CUX1P39880 MIR4768-201ENST00000585270 74 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.24□□□□□ -2.37
CUX1P39880 AC018618.2-201ENST00000604770 446 ntBASIC0.24□□□□□ -2.37
CUX1P39880 NDUFA8P1-201ENST00000605525 367 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AF129408.1-201ENST00000608767 431 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AC117490.2-201ENST00000610042 594 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AC008993.2-201ENST00000631744 806 ntBASIC0.24□□□□□ -2.37
CUX1P39880 AC009950.2-201ENST00000636548 183 ntBASIC0.24□□□□□ -2.37
CUX1P39880 SNORD18A-201ENST00000363753 72 ntBASIC0.23□□□□□ -2.37
CUX1P39880 SNORD95.1-201ENST00000364099 68 ntBASIC0.23□□□□□ -2.37
CUX1P39880 SNORA8.3-201ENST00000384679 139 ntBASIC0.23□□□□□ -2.37
CUX1P39880 PNRC2P1-201ENST00000423940 420 ntBASIC0.23□□□□□ -2.37
CUX1P39880 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC0.23□□□□□ -2.37
CUX1P39880 MTND1P16-201ENST00000465177 898 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AC010631.1-201ENST00000474150 156 ntBASIC0.23□□□□□ -2.37
CUX1P39880 RPL26P26-201ENST00000480251 434 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AC112206.3-201ENST00000514578 389 ntBASIC0.23□□□□□ -2.37
CUX1P39880 HIGD1AP6-201ENST00000521833 279 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.23□□□□□ -2.37
CUX1P39880 AC004217.3-201ENST00000551552 878 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AL357075.2-201ENST00000614906 189 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC0.23□□□□□ -2.37
CUX1P39880 SNORD114-24-201ENST00000365029 72 ntBASIC0.23□□□□□ -2.37
CUX1P39880 RNU6-110P-201ENST00000384508 104 ntBASIC0.23□□□□□ -2.37
CUX1P39880 Y_RNA.571-201ENST00000384753 98 ntBASIC0.23□□□□□ -2.37
CUX1P39880 MIR605-201ENST00000385078 83 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.23□□□□□ -2.37
CUX1P39880 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.23□□□□□ -2.37
CUX1P39880 COX6CP6-201ENST00000490840 228 ntBASIC0.23□□□□□ -2.37
CUX1P39880 PDCD5P2-201ENST00000507570 312 ntBASIC0.23□□□□□ -2.37
CUX1P39880 RNA5SP134-201ENST00000516492 96 ntBASIC0.23□□□□□ -2.37
CUX1P39880 RN7SKP88-201ENST00000516847 250 ntBASIC0.23□□□□□ -2.37
CUX1P39880 IGLVI-20-201ENST00000519296 130 ntBASIC0.23□□□□□ -2.37
CUX1P39880 ZNF705CP-201ENST00000530515 889 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AC018659.1-201ENST00000551083 169 ntBASIC0.23□□□□□ -2.37
CUX1P39880 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.23□□□□□ -2.37
CUX1P39880 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.23□□□□□ -2.37
CUX1P39880 7SK.8-201ENST00000612110 250 ntBASIC0.23□□□□□ -2.37
CUX1P39880 7SK.11-201ENST00000615477 250 ntBASIC0.23□□□□□ -2.37
CUX1P39880 7SK.13-201ENST00000622040 250 ntBASIC0.23□□□□□ -2.37
CUX1P39880 MIR6516-201ENST00000630554 81 ntBASIC0.23□□□□□ -2.37
CUX1P39880 PTGES3P4-201ENST00000426243 356 ntBASIC0.22□□□□□ -2.37
CUX1P39880 CETN4P-201ENST00000432407 469 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AC092685.1-201ENST00000447960 1243 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.22□□□□□ -2.37
CUX1P39880 AP001893.2-201ENST00000526949 202 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.22□□□□□ -2.37
CUX1P39880 AC087897.1-201ENST00000550134 156 ntBASIC0.22□□□□□ -2.37
CUX1P39880 SNORD39.3-201ENST00000584451 71 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AC022432.1-201ENST00000595739 310 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AC004067.1-201ENST00000608733 700 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AC024257.5-201ENST00000612739 531 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AC240442.1-201ENST00000616055 283 ntBASIC0.22□□□□□ -2.37
CUX1P39880 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.22□□□□□ -2.37
CUX1P39880 AC023934.1-201ENST00000574529 2389 ntBASIC0.21□□□□□ -2.38
CUX1P39880 RNA5SP361-201ENST00000362686 118 ntBASIC0.21□□□□□ -2.38
CUX1P39880 RNU4-12P-201ENST00000365233 139 ntBASIC0.21□□□□□ -2.38
CUX1P39880 RNU6-1065P-201ENST00000384513 106 ntBASIC0.21□□□□□ -2.38
CUX1P39880 RPEP5-201ENST00000441137 268 ntBASIC0.21□□□□□ -2.38
CUX1P39880 MTND1P33-201ENST00000446251 917 ntBASIC0.21□□□□□ -2.38
CUX1P39880 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
CUX1P39880 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.21□□□□□ -2.38
CUX1P39880 AL512310.8-201ENST00000550183 120 ntBASIC0.21□□□□□ -2.38
CUX1P39880 AC027104.1-201ENST00000563702 681 ntBASIC0.21□□□□□ -2.38
CUX1P39880 MIR4667-201ENST00000578933 66 ntBASIC0.21□□□□□ -2.38
CUX1P39880 AC090578.1-201ENST00000604955 591 ntBASIC0.21□□□□□ -2.38
CUX1P39880 U2.21-201ENST00000637295 81 ntBASIC0.21□□□□□ -2.38
CUX1P39880 AC245060.5-201ENST00000610778 3293 ntBASIC0.21□□□□□ -2.38
CUX1P39880 RNU4-73P-201ENST00000363164 141 ntBASIC0.2□□□□□ -2.38
CUX1P39880 RNU6-778P-201ENST00000363269 103 ntBASIC0.2□□□□□ -2.38
CUX1P39880 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
CUX1P39880 SNORA51.6-201ENST00000384151 125 ntBASIC0.2□□□□□ -2.38
CUX1P39880 RNU6-611P-201ENST00000384276 104 ntBASIC0.2□□□□□ -2.38
CUX1P39880 AC119751.3-201ENST00000399720 670 ntBASIC0.2□□□□□ -2.38
CUX1P39880 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.2□□□□□ -2.38
CUX1P39880 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
CUX1P39880 GTF2IP13-201ENST00000438487 386 ntBASIC0.2□□□□□ -2.38
CUX1P39880 SNRPGP12-201ENST00000449481 213 ntBASIC0.2□□□□□ -2.38
CUX1P39880 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.2□□□□□ -2.38
CUX1P39880 AC002350.1-201ENST00000490759 375 ntBASIC0.2□□□□□ -2.38
CUX1P39880 SNORA70.22-201ENST00000517160 124 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms